Village Dog South Africa 1
Village Dog South Africa 1 genetic profile from the CanVAS Atlas. 22 dogs in the Atlas, heterozygosity 0.34. Nearest relatives, trait loci frequencies, cohort distribution.
In the atlas, the village dog South Africa 1 clusters consistently as village dog South Africa 1 (100% of the 22 dogs here). Genetic diversity is high (mean heterozygosity 0.3442), reflecting either a mixed-breed cluster or breeds with broad genetic backgrounds. At the trait loci, BMP3 runs lower than average (11% here vs 66%); MSRB3 runs lower than average (30% here vs 80%).
Ranks 85 of 107 on the bottleneck severity scale, in the upper quartile of genetic diversity. Mean heterozygosity is 0.344, notably high, indicates broad genetic background. High breed predictability score (2.94), individual dogs of this breed reliably cluster together genetically. Only 22 dogs of this breed in the atlas, modestly sampled.
Closest genetic neighbors in the atlas: village dog Iraq, village dog Armenia, village dog Tajikistan, Thai Ridgeback, and village dog China.
What the genome says about Village Dog South Africa 1
Computed from the 14,478 research dogs in the Atlas. Methods: technical methodology.
- Village Dog Iraq5.90
- Village Dog Armenia5.95
- Village Dog Tajikistan6.00
- Thai Ridgeback6.46
- Village Dog China6.58
Frequency of the alternate allele in this breed at each locus's representative SNP. Methods + caveats in technical methodology.
| IGF1 | 18% |
| HMGA2 | 21% |
| SMAD2 | 93% |
| LCORL | 73% |
| STC2 | 75% |
| ADAMTS17 | 68% |
| FGF4·CFA18 | 73% |
| FGF4·CFA12 | 96% |
| RSPO2 | 36% |
| FGF5 | 59% |
| KRT71 | 77% |
| MC1R | 86% |
| MSRB3 | 30% |
| BMP3 | 11% |
| SMOC2 | 89% |