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Cosmic medallion portrait of GRLS_grls3IQ5U900, a Golden Retriever
AI portrait
About this portrait

This portrait was algorithmically built from this dog's genome: their genotype at 8 morphology loci (coat length, curl, color, ear set, body size, head shape, skull, furnishings) plus their position within the 14,478-dog atlas. The same dog always reproduces the same portrait. A different dog with different alleles gets a different portrait.

GRLS_grls3IQ5U900

GRLS_grls3IQ5U900 is a Golden Retriever from the GRLS research cohort. One of 14,478 dogs who built the atlas.

See GRLS_grls3IQ5U900 in the atlas
About GRLS_grls3IQ5U900

GRLS_grls3IQ5U900 sits well inside the Golden Retriever cluster - a fairly typical example.

  • Predicted medium by the six body-size genes the atlas reads (IGF1, HMGA2, SMAD2, LCORL, STC2, ADAMTS17).
  • Standard leg length. No chondrodysplasia retrogene variant.
  • Carrier of the RSPO2 wire-coat variant (single copy).
GRLS_grls3IQ5U900's nearest neighbors

The five dogs in the atlas whose genomes sit closest to GRLS_grls3IQ5U900's. Click any of them to keep exploring.

  1. PFZ26F07_PFZ26F07 Golden Retriever 31.50
  2. GRLS_grls11BBNP Golden Retriever 32.64
  3. GRLS_grlsTZWAHYAA Golden Retriever 33.90
  4. GRLS_grlsBUQ26I00 Golden Retriever 34.34
  5. GRLS_grls0B5181FF Golden Retriever 34.68
GRLS_grls3IQ5U900's breed

GRLS_grls3IQ5U900 sits firmly in the Golden Retriever cluster.

Breed similarity from non-negative least squares against 91 breed centroids in PCA-256 space, corrected for atlas sample-size imbalance. Without correction, Goldens (22% of the atlas) leak into every dog's raw NNLS breakdown; with it, the bias falls out. Raw fractions stay in the dataset for re-derivation. Methodology.

  1. Golden Retriever 100%
Source

From the Golden Retriever Lifetime Study . Breed-page reference: Golden Retriever.

Full genotype detail
click to expand

The actual allele call at each locus's representative SNP for this dog. Each gene name links to its page where you can see the per-breed frequency table and the direction of effect.

Body size
IGF1 C/A
HMGA2 C/T
SMAD2 G/G
LCORL G/G
STC2 A/A
ADAMTS17 G/G
Leg length
FGF4·CFA18 C/C
FGF4·CFA12 C/C
Coat
RSPO2 C/T
FGF5 C/C
KRT71 C/C
MC1R T/T
Ear set
MSRB3 A/A
Skull shape
BMP3 C/T
SMOC2 G/G
Technical details
click to expand

The numbers behind the placement. Useful for researchers reproducing the math or debugging an unexpected position; not interesting to most readers.

UMAP-3D position
x 8.317
y 9.975
z 8.220
PCA-256 distance from breed centroid
30.48
Outlier percentile in breed
29
lower = more typical
Top-3 principal components by |z|

The 3 PCs on which GRLS_grls3IQ5U900 scores most extreme, with the 3 highest-loading SNPs on each. Foundation for the future genome-ring visualization.

PC136 z = -2.82
  • chr13:1,840,654 loading 0.0379
  • chr19:3,379,845 loading -0.0360
  • chr26:3,121,537 loading -0.0358
PC105 z = 2.39
  • chr9:10,719,447 loading 0.0424
  • chr34:1,972,619 loading -0.0401
  • chr34:1,432,211 loading -0.0400
PC139 z = 2.32
  • chr11:59,916,847 loading 0.0380
  • chr1:13,688,590 loading -0.0336
  • chr9:44,269,754 loading 0.0311
Ancestry reconstruction error: 0.54
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