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Cosmic medallion portrait of GRLS_grlsB6JZV399, a Golden Retriever
AI portrait
About this portrait

This portrait was algorithmically built from this dog's genome: their genotype at 8 morphology loci (coat length, curl, color, ear set, body size, head shape, skull, furnishings) plus their position within the 14,478-dog atlas. The same dog always reproduces the same portrait. A different dog with different alleles gets a different portrait.

GRLS_grlsB6JZV399

GRLS_grlsB6JZV399 is a Golden Retriever from the GRLS research cohort. One of 14,478 dogs who built the atlas.

See GRLS_grlsB6JZV399 in the atlas
About GRLS_grlsB6JZV399

GRLS_grlsB6JZV399 sits well inside the Golden Retriever cluster - a fairly typical example.

  • Predicted large by the six body-size genes the atlas reads (IGF1, HMGA2, SMAD2, LCORL, STC2, ADAMTS17).
  • Carries one copy of the FGF4 chondrodysplasia retrogene.
  • Wire-coat furnishings - the eyebrow + beard variant at RSPO2.
GRLS_grlsB6JZV399's nearest neighbors

The five dogs in the atlas whose genomes sit closest to GRLS_grlsB6JZV399's. Click any of them to keep exploring.

  1. Oldies_grlscca98e33 Golden Retriever 27.48
  2. GRLS_grlsVWUHSQNN Golden Retriever 27.95
  3. GRLS_grlsV2GFQMEE Golden Retriever 28.95
  4. GRLS_grlsV0BT15XX Golden Retriever 29.16
  5. GRLS_grlsTGTS90YY Golden Retriever 29.20
GRLS_grlsB6JZV399's breed

GRLS_grlsB6JZV399 sits firmly in the Golden Retriever cluster.

Breed similarity from non-negative least squares against 91 breed centroids in PCA-256 space, corrected for atlas sample-size imbalance. Without correction, Goldens (22% of the atlas) leak into every dog's raw NNLS breakdown; with it, the bias falls out. Raw fractions stay in the dataset for re-derivation. Methodology.

  1. Golden Retriever 100%
Source

From the Golden Retriever Lifetime Study . Breed-page reference: Golden Retriever.

Full genotype detail
click to expand

The actual allele call at each locus's representative SNP for this dog. Each gene name links to its page where you can see the per-breed frequency table and the direction of effect.

Body size
IGF1 C/C
HMGA2 T/T
SMAD2 A/G
LCORL G/G
STC2 A/A
ADAMTS17 G/A
Leg length
FGF4·CFA18 C/C
FGF4·CFA12 T/C
Coat
RSPO2 T/T
FGF5 T/C
KRT71 C/C
MC1R T/T
Ear set
MSRB3 A/A
Skull shape
BMP3 C/T
SMOC2 G/G
Technical details
click to expand

The numbers behind the placement. Useful for researchers reproducing the math or debugging an unexpected position; not interesting to most readers.

UMAP-3D position
x 7.045
y 11.539
z 7.841
PCA-256 distance from breed centroid
32.90
Outlier percentile in breed
42
lower = more typical
Top-3 principal components by |z|

The 3 PCs on which GRLS_grlsB6JZV399 scores most extreme, with the 3 highest-loading SNPs on each. Foundation for the future genome-ring visualization.

PC43 z = -4.50
  • chr28:11,007,373 loading 0.0365
  • chr28:5,497,677 loading 0.0343
  • chr7:43,226,466 loading 0.0325
PC179 z = -2.70
  • chr34:3,531,310 loading 0.0341
  • chr34:3,128,578 loading -0.0327
  • chr4:57,360,298 loading -0.0326
PC246 z = 2.10
  • chr4:78,506,139 loading 0.0305
  • chr26:20,960,217 loading -0.0303
  • chr22:28,657,814 loading -0.0289
Ancestry reconstruction error: 0.64
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