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Cosmic medallion portrait of PILOT_grlsFY5J2IJJ, a Golden Retriever
AI portrait
About this portrait

This portrait was algorithmically built from this dog's genome: their genotype at 8 morphology loci (coat length, curl, color, ear set, body size, head shape, skull, furnishings) plus their position within the 14,478-dog atlas. The same dog always reproduces the same portrait. A different dog with different alleles gets a different portrait.

PILOT_grlsFY5J2IJJ

PILOT_grlsFY5J2IJJ is a Golden Retriever from the GRLS research cohort. One of 14,478 dogs who built the atlas.

See PILOT_grlsFY5J2IJJ in the atlas
About PILOT_grlsFY5J2IJJ

PILOT_grlsFY5J2IJJ sits at the edge of the Golden Retriever cluster but still well within it.

  • Predicted large by the six body-size genes the atlas reads (IGF1, HMGA2, SMAD2, LCORL, STC2, ADAMTS17).
  • Standard leg length. No chondrodysplasia retrogene variant.
  • Carrier of the RSPO2 wire-coat variant (single copy).
PILOT_grlsFY5J2IJJ's nearest neighbors

The five dogs in the atlas whose genomes sit closest to PILOT_grlsFY5J2IJJ's. Click any of them to keep exploring.

  1. GRLS_grlsJ7IMMOYY Golden Retriever 31.77
  2. GRLS_grlsJ2YZQMCC Golden Retriever 32.74
  3. GRLS_grlsTGEU6344 Golden Retriever 33.73
  4. GRLS_grlsHTX9MBB Golden Retriever 34.22
  5. GRLS_grls9ZG7XWKK Golden Retriever 34.42
PILOT_grlsFY5J2IJJ's breed

PILOT_grlsFY5J2IJJ sits firmly in the Golden Retriever cluster.

Breed similarity from non-negative least squares against 91 breed centroids in PCA-256 space, corrected for atlas sample-size imbalance. Without correction, Goldens (22% of the atlas) leak into every dog's raw NNLS breakdown; with it, the bias falls out. Raw fractions stay in the dataset for re-derivation. Methodology.

  1. Golden Retriever 100%
Source

From the Golden Retriever Lifetime Study . Breed-page reference: Golden Retriever.

Full genotype detail
click to expand

The actual allele call at each locus's representative SNP for this dog. Each gene name links to its page where you can see the per-breed frequency table and the direction of effect.

Body size
IGF1 C/A
HMGA2 T/T
SMAD2 G/G
LCORL G/G
STC2 A/A
ADAMTS17 G/G
Leg length
FGF4·CFA18 C/C
FGF4·CFA12 C/C
Coat
RSPO2 C/T
FGF5 C/C
KRT71 C/C
MC1R T/T
Ear set
MSRB3 A/A
Skull shape
BMP3 T/T
SMOC2 G/G
Technical details
click to expand

The numbers behind the placement. Useful for researchers reproducing the math or debugging an unexpected position; not interesting to most readers.

UMAP-3D position
x 9.402
y 9.402
z 9.236
PCA-256 distance from breed centroid
39.60
Outlier percentile in breed
75
lower = more typical
Top-3 principal components by |z|

The 3 PCs on which PILOT_grlsFY5J2IJJ scores most extreme, with the 3 highest-loading SNPs on each. Foundation for the future genome-ring visualization.

PC79 z = -4.73
  • chr3:7,389,779 loading 0.0444
  • chr3:6,720,531 loading -0.0378
  • chr3:6,392,552 loading -0.0378
PC97 z = 3.89
  • chr15:42,263,341 loading 0.0348
  • chr18:11,175,691 loading -0.0320
  • chr1:63,849,832 loading 0.0318
PC167 z = -2.99
  • chr6:3,625,190 loading 0.0407
  • chr6:3,210,008 loading -0.0395
  • chr6:3,012,938 loading -0.0395
Ancestry reconstruction error: 0.61
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