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CanVAS Shannon · Founder
Cosmic medallion portrait of GRe_GT216_GRe_GT216, a Golden Retriever
AI portrait
About this portrait

This portrait was algorithmically built from this dog's genome: their genotype at 8 morphology loci (coat length, curl, color, ear set, body size, head shape, skull, furnishings) plus their position within the 14,478-dog atlas. The same dog always reproduces the same portrait. A different dog with different alleles gets a different portrait.

GRe_GT216_GRe_GT216

GRe_GT216_GRe_GT216 is a Golden Retriever from the Shannon research cohort. One of 14,478 dogs who built the atlas.

See GRe_GT216_GRe_GT216 in the atlas
About GRe_GT216_GRe_GT216

GRe_GT216_GRe_GT216 sits at the edge of the Golden Retriever cluster but still well within it.

  • Predicted large by the six body-size genes the atlas reads (IGF1, HMGA2, SMAD2, LCORL, STC2, ADAMTS17).
  • Standard leg length. No chondrodysplasia retrogene variant.
  • Wire-coat furnishings - the eyebrow + beard variant at RSPO2.
GRe_GT216_GRe_GT216's nearest neighbors

The five dogs in the atlas whose genomes sit closest to GRe_GT216_GRe_GT216's. Click any of them to keep exploring.

  1. W_GRe_GRe_GT216 Golden Retriever 4.89
  2. GRLS_grlsS4N38NEE Golden Retriever 31.00
  3. GRLS_grlsMGAPGURR Golden Retriever 31.48
  4. GRLS_grls6W6FNLOO Golden Retriever 31.82
  5. GRLS_grlsMNPUVE00 Golden Retriever 31.87
GRe_GT216_GRe_GT216's breed

GRe_GT216_GRe_GT216 sits in the Golden Retriever cluster, with genome overlap to Labrador Retriever - sister breeds nearby in the atlas.

Breed similarity from non-negative least squares against 91 breed centroids in PCA-256 space, corrected for atlas sample-size imbalance. Without correction, Goldens (22% of the atlas) leak into every dog's raw NNLS breakdown; with it, the bias falls out. Raw fractions stay in the dataset for re-derivation. Methodology.

  1. Golden Retriever 83%
  2. Labrador Retriever 17%
Source

From the CanVAS (Shannon cohort) . Breed-page reference: Golden Retriever.

Full genotype detail
click to expand

The actual allele call at each locus's representative SNP for this dog. Each gene name links to its page where you can see the per-breed frequency table and the direction of effect.

Body size
IGF1 C/C
HMGA2 C/T
SMAD2 G/G
LCORL G/G
STC2 A/A
ADAMTS17 G/A
Leg length
FGF4·CFA18 C/C
FGF4·CFA12 C/C
Coat
RSPO2 T/T
FGF5 T/C
KRT71 C/C
MC1R T/T
Ear set
MSRB3 A/A
Skull shape
BMP3 C/T
SMOC2 G/G
Technical details
click to expand

The numbers behind the placement. Useful for researchers reproducing the math or debugging an unexpected position; not interesting to most readers.

UMAP-3D position
x 8.404
y 10.608
z 9.475
PCA-256 distance from breed centroid
35.75
Outlier percentile in breed
57
lower = more typical
Top-3 principal components by |z|

The 3 PCs on which GRe_GT216_GRe_GT216 scores most extreme, with the 3 highest-loading SNPs on each. Foundation for the future genome-ring visualization.

PC63 z = 4.12
  • chr22:1,969,643 loading 0.0329
  • chr22:1,892,165 loading 0.0327
  • chr17:12,181,234 loading 0.0322
PC64 z = -4.08
  • chr8:38,372,734 loading 0.0317
  • chr23:20,107,050 loading 0.0304
  • chr23:19,874,668 loading -0.0292
PC199 z = -2.72
  • chr3:72,396,064 loading 0.0333
  • chr10:25,699,634 loading 0.0321
  • chr13:22,942,852 loading 0.0315
Ancestry reconstruction error: 0.57
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