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CanVAS Shannon · Founder
Cosmic medallion portrait of GRe_GT220_GRe_GT220, a Golden Retriever
AI portrait
About this portrait

This portrait was algorithmically built from this dog's genome: their genotype at 8 morphology loci (coat length, curl, color, ear set, body size, head shape, skull, furnishings) plus their position within the 14,478-dog atlas. The same dog always reproduces the same portrait. A different dog with different alleles gets a different portrait.

GRe_GT220_GRe_GT220

GRe_GT220_GRe_GT220 is a Golden Retriever from the Shannon research cohort. One of 14,478 dogs who built the atlas.

See GRe_GT220_GRe_GT220 in the atlas
About GRe_GT220_GRe_GT220

GRe_GT220_GRe_GT220 sits near the center of the Golden Retriever cluster - genetically very typical for the breed.

  • Predicted large by the six body-size genes the atlas reads (IGF1, HMGA2, SMAD2, LCORL, STC2, ADAMTS17).
  • Carries one copy of the FGF4 chondrodysplasia retrogene.
  • Carrier of the RSPO2 wire-coat variant (single copy).
GRe_GT220_GRe_GT220's nearest neighbors

The five dogs in the atlas whose genomes sit closest to GRe_GT220_GRe_GT220's. Click any of them to keep exploring.

  1. GRLS_grls7PGZ1RNN Golden Retriever 28.72
  2. GRLS_grlsYQFB3ZZ Golden Retriever 28.82
  3. PFZ26G01_PFZ26G01 Golden Retriever 29.13
  4. GRLS_grlsDS816Y55 Golden Retriever 30.63
  5. Oldies_grlsd989ac83 Golden Retriever 31.11
GRe_GT220_GRe_GT220's breed

GRe_GT220_GRe_GT220 sits in the Golden Retriever cluster, with genome overlap to Labrador Retriever - sister breeds nearby in the atlas.

Breed similarity from non-negative least squares against 91 breed centroids in PCA-256 space, corrected for atlas sample-size imbalance. Without correction, Goldens (22% of the atlas) leak into every dog's raw NNLS breakdown; with it, the bias falls out. Raw fractions stay in the dataset for re-derivation. Methodology.

  1. Golden Retriever 81%
  2. Labrador Retriever 19%
Source

From the CanVAS (Shannon cohort) . Breed-page reference: Golden Retriever.

Full genotype detail
click to expand

The actual allele call at each locus's representative SNP for this dog. Each gene name links to its page where you can see the per-breed frequency table and the direction of effect.

Body size
IGF1 C/A
HMGA2 C/T
SMAD2 G/G
LCORL G/G
STC2 A/A
ADAMTS17 G/A
Leg length
FGF4·CFA18 C/C
FGF4·CFA12 T/C
Coat
RSPO2 C/T
FGF5 C/C
KRT71 C/C
MC1R T/T
Ear set
MSRB3 A/A
Skull shape
BMP3 C/C
SMOC2 A/G
Technical details
click to expand

The numbers behind the placement. Useful for researchers reproducing the math or debugging an unexpected position; not interesting to most readers.

UMAP-3D position
x 7.604
y 11.067
z 8.127
PCA-256 distance from breed centroid
28.52
Outlier percentile in breed
17
lower = more typical
Top-3 principal components by |z|

The 3 PCs on which GRe_GT220_GRe_GT220 scores most extreme, with the 3 highest-loading SNPs on each. Foundation for the future genome-ring visualization.

PC154 z = -2.46
  • chr34:1,972,619 loading 0.0431
  • chr34:1,533,247 loading 0.0397
  • chr34:2,125,452 loading 0.0365
PC209 z = -2.13
  • chr7:5,846,709 loading 0.0374
  • chr7:2,256,768 loading -0.0351
  • chr25:8,169,704 loading 0.0337
PC157 z = 2.09
  • chr10:7,000,030 loading 0.0335
  • chr10:4,826,260 loading -0.0333
  • chr23:15,561,811 loading -0.0321
Ancestry reconstruction error: 0.55
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