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Cosmic medallion portrait of GRLS_grls10PF8W99, a Golden Retriever
AI portrait
About this portrait

This portrait was algorithmically built from this dog's genome: their genotype at 8 morphology loci (coat length, curl, color, ear set, body size, head shape, skull, furnishings) plus their position within the 14,478-dog atlas. The same dog always reproduces the same portrait. A different dog with different alleles gets a different portrait.

GRLS_grls10PF8W99

GRLS_grls10PF8W99 is a Golden Retriever from the GRLS research cohort. One of 14,478 dogs who built the atlas.

See GRLS_grls10PF8W99 in the atlas
About GRLS_grls10PF8W99

GRLS_grls10PF8W99 sits at the edge of the Golden Retriever cluster but still well within it.

  • Predicted large by the six body-size genes the atlas reads (IGF1, HMGA2, SMAD2, LCORL, STC2, ADAMTS17).
  • Standard leg length. No chondrodysplasia retrogene variant.
  • Carrier of the RSPO2 wire-coat variant (single copy).
GRLS_grls10PF8W99's nearest neighbors

The five dogs in the atlas whose genomes sit closest to GRLS_grls10PF8W99's. Click any of them to keep exploring.

  1. GRLS_grls8G77B1CC Golden Retriever 21.37
  2. GRLS_grlsYLW7GC55 Golden Retriever 23.81
  3. GRLS_grls1FDQRRR Golden Retriever 23.84
  4. Oldies_grls5e41c65c Golden Retriever 28.29
  5. GRLS_grlsE2Q6OBTT Golden Retriever 30.97
GRLS_grls10PF8W99's breed

GRLS_grls10PF8W99 sits in the Golden Retriever cluster, with genome overlap to Labrador Retriever - sister breeds nearby in the atlas.

Breed similarity from non-negative least squares against 91 breed centroids in PCA-256 space, corrected for atlas sample-size imbalance. Without correction, Goldens (22% of the atlas) leak into every dog's raw NNLS breakdown; with it, the bias falls out. Raw fractions stay in the dataset for re-derivation. Methodology.

  1. Golden Retriever 78%
  2. Labrador Retriever 23%
Source

From the Golden Retriever Lifetime Study . Breed-page reference: Golden Retriever.

Full genotype detail
click to expand

The actual allele call at each locus's representative SNP for this dog. Each gene name links to its page where you can see the per-breed frequency table and the direction of effect.

Body size
IGF1 C/A
HMGA2 T/T
SMAD2 G/G
LCORL G/G
STC2 A/A
ADAMTS17 G/A
Leg length
FGF4·CFA18 C/C
FGF4·CFA12 C/C
Coat
RSPO2 C/T
FGF5 C/C
KRT71 C/C
MC1R T/T
Ear set
MSRB3 A/A
Skull shape
BMP3 C/C
SMOC2 A/G
Technical details
click to expand

The numbers behind the placement. Useful for researchers reproducing the math or debugging an unexpected position; not interesting to most readers.

UMAP-3D position
x 8.146
y 9.264
z 7.527
PCA-256 distance from breed centroid
36.04
Outlier percentile in breed
58
lower = more typical
Top-3 principal components by |z|

The 3 PCs on which GRLS_grls10PF8W99 scores most extreme, with the 3 highest-loading SNPs on each. Foundation for the future genome-ring visualization.

PC206 z = -3.36
  • chr7:42,935,741 loading 0.0386
  • chr19:34,609,563 loading -0.0356
  • chr30:22,656,587 loading 0.0321
PC157 z = -3.17
  • chr10:7,000,030 loading 0.0335
  • chr10:4,826,260 loading -0.0333
  • chr23:15,561,811 loading -0.0321
PC246 z = 2.82
  • chr4:78,506,139 loading 0.0305
  • chr26:20,960,217 loading -0.0303
  • chr22:28,657,814 loading -0.0289
Ancestry reconstruction error: 0.60
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