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Cosmic medallion portrait of GRLS_grls20EDCSKK, a Golden Retriever
AI portrait
About this portrait

This portrait was algorithmically built from this dog's genome: their genotype at 8 morphology loci (coat length, curl, color, ear set, body size, head shape, skull, furnishings) plus their position within the 14,478-dog atlas. The same dog always reproduces the same portrait. A different dog with different alleles gets a different portrait.

GRLS_grls20EDCSKK

GRLS_grls20EDCSKK is a Golden Retriever from the GRLS research cohort. One of 14,478 dogs who built the atlas.

See GRLS_grls20EDCSKK in the atlas
About GRLS_grls20EDCSKK

GRLS_grls20EDCSKK sits near the center of the Golden Retriever cluster - genetically very typical for the breed.

  • Predicted large by the six body-size genes the atlas reads (IGF1, HMGA2, SMAD2, LCORL, STC2, ADAMTS17).
  • Standard leg length. No chondrodysplasia retrogene variant.
  • Carrier of the RSPO2 wire-coat variant (single copy).
GRLS_grls20EDCSKK's nearest neighbors

The five dogs in the atlas whose genomes sit closest to GRLS_grls20EDCSKK's. Click any of them to keep exploring.

  1. GRLS_grlsZPGQ2BB Golden Retriever 27.55
  2. GRLS_grlsKTIEQWPP Golden Retriever 30.06
  3. GRLS_grls40UEVBZZ Golden Retriever 30.60
  4. GRLS_grls2GVZEY99 Golden Retriever 30.61
  5. GRLS_grlsUWNZ8Q66 Golden Retriever 30.65
GRLS_grls20EDCSKK's breed

GRLS_grls20EDCSKK sits in the Golden Retriever cluster, with genome overlap to Labrador Retriever - sister breeds nearby in the atlas.

Breed similarity from non-negative least squares against 91 breed centroids in PCA-256 space, corrected for atlas sample-size imbalance. Without correction, Goldens (22% of the atlas) leak into every dog's raw NNLS breakdown; with it, the bias falls out. Raw fractions stay in the dataset for re-derivation. Methodology.

  1. Golden Retriever 81%
  2. Labrador Retriever 19%
Source

From the Golden Retriever Lifetime Study . Breed-page reference: Golden Retriever.

Full genotype detail
click to expand

The actual allele call at each locus's representative SNP for this dog. Each gene name links to its page where you can see the per-breed frequency table and the direction of effect.

Body size
IGF1 C/C
HMGA2 T/T
SMAD2 A/G
LCORL G/G
STC2 A/A
ADAMTS17 G/G
Leg length
FGF4·CFA18 C/C
FGF4·CFA12 C/C
Coat
RSPO2 C/T
FGF5 T/T
KRT71 C/C
MC1R T/T
Ear set
MSRB3 A/A
Skull shape
BMP3 T/T
SMOC2 A/G
Technical details
click to expand

The numbers behind the placement. Useful for researchers reproducing the math or debugging an unexpected position; not interesting to most readers.

UMAP-3D position
x 8.348
y 10.627
z 7.184
PCA-256 distance from breed centroid
24.99
Outlier percentile in breed
2
lower = more typical
Top-3 principal components by |z|

The 3 PCs on which GRLS_grls20EDCSKK scores most extreme, with the 3 highest-loading SNPs on each. Foundation for the future genome-ring visualization.

PC226 z = 2.08
  • chr21:30,613,458 loading 0.0378
  • chr28:5,497,677 loading 0.0367
  • chr28:5,428,661 loading 0.0358
PC168 z = 2.07
  • chr13:7,517,248 loading 0.0370
  • chr13:1,243,516 loading -0.0357
  • chr3:3,383,464 loading 0.0349
PC147 z = -1.93
  • chr20:14,856,460 loading 0.0316
  • chr10:6,497,921 loading 0.0302
  • chr10:6,396,863 loading 0.0301
Ancestry reconstruction error: 0.47
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