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Cosmic medallion portrait of GRLS_grls3E6Q6J, a Golden Retriever
AI portrait
About this portrait

This portrait was algorithmically built from this dog's genome: their genotype at 8 morphology loci (coat length, curl, color, ear set, body size, head shape, skull, furnishings) plus their position within the 14,478-dog atlas. The same dog always reproduces the same portrait. A different dog with different alleles gets a different portrait.

GRLS_grls3E6Q6J

GRLS_grls3E6Q6J is a Golden Retriever from the GRLS research cohort. One of 14,478 dogs who built the atlas.

See GRLS_grls3E6Q6J in the atlas
About GRLS_grls3E6Q6J

GRLS_grls3E6Q6J sits at the edge of the Golden Retriever cluster but still well within it.

  • Predicted large by the six body-size genes the atlas reads (IGF1, HMGA2, SMAD2, LCORL, STC2, ADAMTS17).
  • Standard leg length. No chondrodysplasia retrogene variant.
  • Wire-coat furnishings - the eyebrow + beard variant at RSPO2.
GRLS_grls3E6Q6J's nearest neighbors

The five dogs in the atlas whose genomes sit closest to GRLS_grls3E6Q6J's. Click any of them to keep exploring.

  1. PFZ8C06_PFZ8C06 Golden Retriever 24.51
  2. PFZ7A09_PFZ7A09 Golden Retriever 27.02
  3. GRLS_grls4SW9ND66 Golden Retriever 27.10
  4. GRLS_grls1JY77077 Golden Retriever 27.43
  5. Oldies_grlsf72693ff Golden Retriever 27.64
GRLS_grls3E6Q6J's breed

GRLS_grls3E6Q6J sits in the Golden Retriever cluster, with genome overlap to Labrador Retriever - sister breeds nearby in the atlas.

Breed similarity from non-negative least squares against 91 breed centroids in PCA-256 space, corrected for atlas sample-size imbalance. Without correction, Goldens (22% of the atlas) leak into every dog's raw NNLS breakdown; with it, the bias falls out. Raw fractions stay in the dataset for re-derivation. Methodology.

  1. Golden Retriever 79%
  2. Labrador Retriever 21%
Source

From the Golden Retriever Lifetime Study . Breed-page reference: Golden Retriever.

Full genotype detail
click to expand

The actual allele call at each locus's representative SNP for this dog. Each gene name links to its page where you can see the per-breed frequency table and the direction of effect.

Body size
IGF1 C/A
HMGA2 T/T
SMAD2 A/G
LCORL A/G
STC2 C/A
ADAMTS17 G/G
Leg length
FGF4·CFA18 C/C
FGF4·CFA12 C/C
Coat
RSPO2 T/T
FGF5 T/C
KRT71 C/C
MC1R T/T
Ear set
MSRB3 A/A
Skull shape
BMP3 C/T
SMOC2 A/G
Technical details
click to expand

The numbers behind the placement. Useful for researchers reproducing the math or debugging an unexpected position; not interesting to most readers.

UMAP-3D position
x 5.431
y 10.737
z 7.741
PCA-256 distance from breed centroid
35.38
Outlier percentile in breed
54
lower = more typical
Top-3 principal components by |z|

The 3 PCs on which GRLS_grls3E6Q6J scores most extreme, with the 3 highest-loading SNPs on each. Foundation for the future genome-ring visualization.

PC19 z = -3.60
  • chr36:5,342,283 loading 0.0327
  • chr3:69,391,244 loading 0.0300
  • chr25:17,826,837 loading -0.0278
PC200 z = 3.00
  • chr26:9,892,015 loading 0.0403
  • chr19:3,081,516 loading 0.0393
  • chr26:3,675,581 loading 0.0362
PC207 z = 2.27
  • chr13:666,991 loading 0.0347
  • chr25:4,215,319 loading -0.0336
  • chr18:33,604,976 loading 0.0307
Ancestry reconstruction error: 0.66
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