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Cosmic medallion portrait of GRLS_grls3US5YZJJ, a Golden Retriever
AI portrait
About this portrait

This portrait was algorithmically built from this dog's genome: their genotype at 8 morphology loci (coat length, curl, color, ear set, body size, head shape, skull, furnishings) plus their position within the 14,478-dog atlas. The same dog always reproduces the same portrait. A different dog with different alleles gets a different portrait.

GRLS_grls3US5YZJJ

GRLS_grls3US5YZJJ is a Golden Retriever from the GRLS research cohort. One of 14,478 dogs who built the atlas.

See GRLS_grls3US5YZJJ in the atlas
About GRLS_grls3US5YZJJ

GRLS_grls3US5YZJJ sits well inside the Golden Retriever cluster - a fairly typical example.

  • Predicted medium by the six body-size genes the atlas reads (IGF1, HMGA2, SMAD2, LCORL, STC2, ADAMTS17).
  • Standard leg length. No chondrodysplasia retrogene variant.
  • Wire-coat furnishings - the eyebrow + beard variant at RSPO2.
GRLS_grls3US5YZJJ's nearest neighbors

The five dogs in the atlas whose genomes sit closest to GRLS_grls3US5YZJJ's. Click any of them to keep exploring.

  1. PILOT_grls6G37VK44 Golden Retriever 28.04
  2. GRLS_grlsBFQIWUMM Golden Retriever 28.70
  3. GRLS_grls38SUGH66 Golden Retriever 30.46
  4. PFZ5D07_PFZ5D07 Golden Retriever 33.51
  5. GRLS_grlsMFNUID33 Golden Retriever 34.03
GRLS_grls3US5YZJJ's breed

GRLS_grls3US5YZJJ sits in the Golden Retriever cluster, with genome overlap to Labrador Retriever - sister breeds nearby in the atlas.

Breed similarity from non-negative least squares against 91 breed centroids in PCA-256 space, corrected for atlas sample-size imbalance. Without correction, Goldens (22% of the atlas) leak into every dog's raw NNLS breakdown; with it, the bias falls out. Raw fractions stay in the dataset for re-derivation. Methodology.

  1. Golden Retriever 80%
  2. Labrador Retriever 20%
Source

From the Golden Retriever Lifetime Study . Breed-page reference: Golden Retriever.

Full genotype detail
click to expand

The actual allele call at each locus's representative SNP for this dog. Each gene name links to its page where you can see the per-breed frequency table and the direction of effect.

Body size
IGF1 C/A
HMGA2 C/T
SMAD2 G/G
LCORL G/G
STC2 A/A
ADAMTS17 G/G
Leg length
FGF4·CFA18 C/C
FGF4·CFA12 C/C
Coat
RSPO2 T/T
FGF5 T/C
KRT71 C/C
MC1R T/C
Ear set
MSRB3 A/A
Skull shape
BMP3 C/T
SMOC2 G/G
Technical details
click to expand

The numbers behind the placement. Useful for researchers reproducing the math or debugging an unexpected position; not interesting to most readers.

UMAP-3D position
x 8.825
y 9.524
z 8.567
PCA-256 distance from breed centroid
34.01
Outlier percentile in breed
47
lower = more typical
Top-3 principal components by |z|

The 3 PCs on which GRLS_grls3US5YZJJ scores most extreme, with the 3 highest-loading SNPs on each. Foundation for the future genome-ring visualization.

PC138 z = -3.09
  • chr15:23,130,452 loading 0.0401
  • chr28:1,724,663 loading 0.0367
  • chr15:42,263,341 loading 0.0350
PC146 z = 2.90
  • chr2:41,835,446 loading 0.0357
  • chr2:40,086,289 loading 0.0341
  • chr22:28,657,814 loading -0.0335
PC169 z = -2.83
  • chr11:19,692,422 loading 0.0364
  • chr11:16,885,817 loading -0.0352
  • chr9:14,385,903 loading 0.0333
Ancestry reconstruction error: 0.53
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