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Cosmic medallion portrait of GRLS_grls3ZQTDJ11, a Golden Retriever
AI portrait
About this portrait

This portrait was algorithmically built from this dog's genome: their genotype at 8 morphology loci (coat length, curl, color, ear set, body size, head shape, skull, furnishings) plus their position within the 14,478-dog atlas. The same dog always reproduces the same portrait. A different dog with different alleles gets a different portrait.

GRLS_grls3ZQTDJ11

GRLS_grls3ZQTDJ11 is a Golden Retriever from the GRLS research cohort. One of 14,478 dogs who built the atlas.

See GRLS_grls3ZQTDJ11 in the atlas
About GRLS_grls3ZQTDJ11

GRLS_grls3ZQTDJ11 is a notable Golden Retriever - distinctive within the breed.

  • Predicted medium by the six body-size genes the atlas reads (IGF1, HMGA2, SMAD2, LCORL, STC2, ADAMTS17).
  • Standard leg length. No chondrodysplasia retrogene variant.
  • Smooth coat. No wire-furnishings variant at RSPO2.
GRLS_grls3ZQTDJ11's nearest neighbors

The five dogs in the atlas whose genomes sit closest to GRLS_grls3ZQTDJ11's. Click any of them to keep exploring.

  1. GRLS_grlsMDNH1OCC Golden Retriever 32.14
  2. GRLS_grlsRTE6CR33 Golden Retriever 35.36
  3. GRLS_grlsDGF143 Golden Retriever 35.73
  4. GRLS_grlsXDSKOZYY Golden Retriever 35.85
  5. GRLS_grlsC29NCATT Golden Retriever 36.01
GRLS_grls3ZQTDJ11's breed

GRLS_grls3ZQTDJ11 sits in the Golden Retriever cluster, with genome overlap to Labrador Retriever - sister breeds nearby in the atlas.

Breed similarity from non-negative least squares against 91 breed centroids in PCA-256 space, corrected for atlas sample-size imbalance. Without correction, Goldens (22% of the atlas) leak into every dog's raw NNLS breakdown; with it, the bias falls out. Raw fractions stay in the dataset for re-derivation. Methodology.

  1. Golden Retriever 74%
  2. Labrador Retriever 26%
Source

From the Golden Retriever Lifetime Study . Breed-page reference: Golden Retriever.

Full genotype detail
click to expand

The actual allele call at each locus's representative SNP for this dog. Each gene name links to its page where you can see the per-breed frequency table and the direction of effect.

Body size
IGF1 A/A
HMGA2 C/T
SMAD2 G/G
LCORL G/G
STC2 A/A
ADAMTS17 G/A
Leg length
FGF4·CFA18 C/C
FGF4·CFA12 C/C
Coat
RSPO2 C/C
FGF5 T/C
KRT71 C/C
MC1R T/C
Ear set
MSRB3 A/A
Skull shape
BMP3 C/T
SMOC2 G/G
Technical details
click to expand

The numbers behind the placement. Useful for researchers reproducing the math or debugging an unexpected position; not interesting to most readers.

UMAP-3D position
x 8.498
y 9.309
z 9.056
PCA-256 distance from breed centroid
41.08
Outlier percentile in breed
81
lower = more typical
Top-3 principal components by |z|

The 3 PCs on which GRLS_grls3ZQTDJ11 scores most extreme, with the 3 highest-loading SNPs on each. Foundation for the future genome-ring visualization.

PC154 z = 3.81
  • chr34:1,972,619 loading 0.0431
  • chr34:1,533,247 loading 0.0397
  • chr34:2,125,452 loading 0.0365
PC77 z = -3.78
  • chr23:13,507,176 loading 0.0356
  • chr6:36,116,228 loading 0.0355
  • chr23:14,586,660 loading 0.0337
PC103 z = -3.64
  • chr1:73,451,600 loading 0.0356
  • chr1:69,785,342 loading 0.0343
  • chr18:18,333,364 loading 0.0329
Ancestry reconstruction error: 0.59
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