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Cosmic medallion portrait of GRLS_grls4J23FPEE, a Golden Retriever
AI portrait
About this portrait

This portrait was algorithmically built from this dog's genome: their genotype at 8 morphology loci (coat length, curl, color, ear set, body size, head shape, skull, furnishings) plus their position within the 14,478-dog atlas. The same dog always reproduces the same portrait. A different dog with different alleles gets a different portrait.

GRLS_grls4J23FPEE

GRLS_grls4J23FPEE is a Golden Retriever from the GRLS research cohort. One of 14,478 dogs who built the atlas.

See GRLS_grls4J23FPEE in the atlas
About GRLS_grls4J23FPEE

GRLS_grls4J23FPEE sits near the center of the Golden Retriever cluster - genetically very typical for the breed.

  • Predicted large by the six body-size genes the atlas reads (IGF1, HMGA2, SMAD2, LCORL, STC2, ADAMTS17).
  • Standard leg length. No chondrodysplasia retrogene variant.
  • Smooth coat. No wire-furnishings variant at RSPO2.
GRLS_grls4J23FPEE's nearest neighbors

The five dogs in the atlas whose genomes sit closest to GRLS_grls4J23FPEE's. Click any of them to keep exploring.

  1. GRLS_grlsDW39Z1 Golden Retriever 24.74
  2. GRLS_grls3U5V4NBB Golden Retriever 25.78
  3. GRLS_grlsEI1W4ZQQ Golden Retriever 32.02
  4. GRLS_grlsPG2IIE44 Golden Retriever 32.26
  5. GRLS_grls40UEVBZZ Golden Retriever 32.51
GRLS_grls4J23FPEE's breed

GRLS_grls4J23FPEE sits in the Golden Retriever cluster, with genome overlap to Labrador Retriever - sister breeds nearby in the atlas.

Breed similarity from non-negative least squares against 91 breed centroids in PCA-256 space, corrected for atlas sample-size imbalance. Without correction, Goldens (22% of the atlas) leak into every dog's raw NNLS breakdown; with it, the bias falls out. Raw fractions stay in the dataset for re-derivation. Methodology.

  1. Golden Retriever 79%
  2. Labrador Retriever 21%
Source

From the Golden Retriever Lifetime Study . Breed-page reference: Golden Retriever.

Full genotype detail
click to expand

The actual allele call at each locus's representative SNP for this dog. Each gene name links to its page where you can see the per-breed frequency table and the direction of effect.

Body size
IGF1 C/C
HMGA2 T/T
SMAD2 A/G
LCORL G/G
STC2 A/A
ADAMTS17 G/G
Leg length
FGF4·CFA18 C/C
FGF4·CFA12 C/C
Coat
RSPO2 C/C
FGF5 T/C
KRT71 C/C
MC1R T/C
Ear set
MSRB3 A/A
Skull shape
BMP3 C/T
SMOC2 G/G
Technical details
click to expand

The numbers behind the placement. Useful for researchers reproducing the math or debugging an unexpected position; not interesting to most readers.

UMAP-3D position
x 8.544
y 10.539
z 8.016
PCA-256 distance from breed centroid
27.53
Outlier percentile in breed
11
lower = more typical
Top-3 principal components by |z|

The 3 PCs on which GRLS_grls4J23FPEE scores most extreme, with the 3 highest-loading SNPs on each. Foundation for the future genome-ring visualization.

PC177 z = 1.97
  • chr12:606,598 loading 0.0433
  • chr12:4,288,226 loading -0.0385
  • chr12:1,150,085 loading 0.0383
PC245 z = -1.95
  • chr5:79,585,745 loading 0.0313
  • chr14:5,105,246 loading 0.0300
  • chr24:4,166,647 loading -0.0289
PC130 z = 1.87
  • chr6:33,386,202 loading 0.0387
  • chr6:30,876,588 loading 0.0376
  • chr6:30,769,727 loading -0.0372
Ancestry reconstruction error: 0.48
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