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Cosmic medallion portrait of GRLS_grls54KD2OTT, a Golden Retriever
AI portrait
About this portrait

This portrait was algorithmically built from this dog's genome: their genotype at 8 morphology loci (coat length, curl, color, ear set, body size, head shape, skull, furnishings) plus their position within the 14,478-dog atlas. The same dog always reproduces the same portrait. A different dog with different alleles gets a different portrait.

GRLS_grls54KD2OTT

GRLS_grls54KD2OTT is a Golden Retriever from the GRLS research cohort. One of 14,478 dogs who built the atlas.

See GRLS_grls54KD2OTT in the atlas
About GRLS_grls54KD2OTT

GRLS_grls54KD2OTT sits well inside the Golden Retriever cluster - a fairly typical example.

  • Predicted large by the six body-size genes the atlas reads (IGF1, HMGA2, SMAD2, LCORL, STC2, ADAMTS17).
  • Standard leg length. No chondrodysplasia retrogene variant.
  • Carrier of the RSPO2 wire-coat variant (single copy).
GRLS_grls54KD2OTT's nearest neighbors

The five dogs in the atlas whose genomes sit closest to GRLS_grls54KD2OTT's. Click any of them to keep exploring.

  1. GRLS_grlsLYXE35WW Golden Retriever 23.66
  2. GRLS_grlsJMV70UFF Golden Retriever 24.65
  3. GRLS_grlsEIJTMIAA Golden Retriever 28.32
  4. PFZ27F05_PFZ27F05 Golden Retriever 30.37
  5. GRLS_grlsQYL0XHWW Golden Retriever 30.42
GRLS_grls54KD2OTT's breed

GRLS_grls54KD2OTT sits in the Golden Retriever cluster, with genome overlap to Labrador Retriever - sister breeds nearby in the atlas.

Breed similarity from non-negative least squares against 91 breed centroids in PCA-256 space, corrected for atlas sample-size imbalance. Without correction, Goldens (22% of the atlas) leak into every dog's raw NNLS breakdown; with it, the bias falls out. Raw fractions stay in the dataset for re-derivation. Methodology.

  1. Golden Retriever 74%
  2. Labrador Retriever 26%
Source

From the Golden Retriever Lifetime Study . Breed-page reference: Golden Retriever.

Full genotype detail
click to expand

The actual allele call at each locus's representative SNP for this dog. Each gene name links to its page where you can see the per-breed frequency table and the direction of effect.

Body size
IGF1 C/A
HMGA2 C/T
SMAD2 G/G
LCORL G/G
STC2 A/A
ADAMTS17 G/A
Leg length
FGF4·CFA18 C/C
FGF4·CFA12 C/C
Coat
RSPO2 C/T
FGF5 T/T
KRT71 C/C
MC1R T/C
Ear set
MSRB3 A/A
Skull shape
BMP3 T/T
SMOC2 G/G
Technical details
click to expand

The numbers behind the placement. Useful for researchers reproducing the math or debugging an unexpected position; not interesting to most readers.

UMAP-3D position
x 7.284
y 11.563
z 8.192
PCA-256 distance from breed centroid
31.88
Outlier percentile in breed
37
lower = more typical
Top-3 principal components by |z|

The 3 PCs on which GRLS_grls54KD2OTT scores most extreme, with the 3 highest-loading SNPs on each. Foundation for the future genome-ring visualization.

PC199 z = -2.63
  • chr3:72,396,064 loading 0.0333
  • chr10:25,699,634 loading 0.0321
  • chr13:22,942,852 loading 0.0315
PC166 z = 2.43
  • chr24:4,330,562 loading 0.0317
  • chr24:4,114,956 loading -0.0315
  • chr1:95,775,744 loading -0.0303
PC99 z = 2.34
  • chr34:1,972,619 loading 0.0494
  • chr34:1,533,247 loading 0.0454
  • chr34:2,440,834 loading -0.0445
Ancestry reconstruction error: 0.61
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