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Cosmic medallion portrait of GRLS_grls5ZUT2BYY, a Golden Retriever
AI portrait
About this portrait

This portrait was algorithmically built from this dog's genome: their genotype at 8 morphology loci (coat length, curl, color, ear set, body size, head shape, skull, furnishings) plus their position within the 14,478-dog atlas. The same dog always reproduces the same portrait. A different dog with different alleles gets a different portrait.

GRLS_grls5ZUT2BYY

GRLS_grls5ZUT2BYY is a Golden Retriever from the GRLS research cohort. One of 14,478 dogs who built the atlas.

See GRLS_grls5ZUT2BYY in the atlas
About GRLS_grls5ZUT2BYY

GRLS_grls5ZUT2BYY sits well inside the Golden Retriever cluster - a fairly typical example.

  • Predicted large by the six body-size genes the atlas reads (IGF1, HMGA2, SMAD2, LCORL, STC2, ADAMTS17).
  • Standard leg length. No chondrodysplasia retrogene variant.
  • Wire-coat furnishings - the eyebrow + beard variant at RSPO2.
GRLS_grls5ZUT2BYY's nearest neighbors

The five dogs in the atlas whose genomes sit closest to GRLS_grls5ZUT2BYY's. Click any of them to keep exploring.

  1. GRLS_grls0B5181FF Golden Retriever 27.74
  2. GRLS_grlsGL9S86MM Golden Retriever 28.34
  3. GRLS_grlsZRYXUIGG Golden Retriever 29.27
  4. GRLS_grls1FSWKG44 Golden Retriever 30.41
  5. GRLS_grls67WPRHYY Golden Retriever 31.11
GRLS_grls5ZUT2BYY's breed

GRLS_grls5ZUT2BYY sits in the Golden Retriever cluster, with genome overlap to Labrador Retriever - sister breeds nearby in the atlas.

Breed similarity from non-negative least squares against 91 breed centroids in PCA-256 space, corrected for atlas sample-size imbalance. Without correction, Goldens (22% of the atlas) leak into every dog's raw NNLS breakdown; with it, the bias falls out. Raw fractions stay in the dataset for re-derivation. Methodology.

  1. Golden Retriever 82%
  2. Labrador Retriever 18%
Source

From the Golden Retriever Lifetime Study . Breed-page reference: Golden Retriever.

Full genotype detail
click to expand

The actual allele call at each locus's representative SNP for this dog. Each gene name links to its page where you can see the per-breed frequency table and the direction of effect.

Body size
IGF1 C/A
HMGA2 C/T
SMAD2 G/G
LCORL G/G
STC2 A/A
ADAMTS17 A/A
Leg length
FGF4·CFA18 C/C
FGF4·CFA12 C/C
Coat
RSPO2 T/T
FGF5 T/T
KRT71 C/C
MC1R T/T
Ear set
MSRB3 A/A
Skull shape
BMP3 T/T
SMOC2 G/G
Technical details
click to expand

The numbers behind the placement. Useful for researchers reproducing the math or debugging an unexpected position; not interesting to most readers.

UMAP-3D position
x 8.066
y 10.333
z 6.857
PCA-256 distance from breed centroid
31.58
Outlier percentile in breed
36
lower = more typical
Top-3 principal components by |z|

The 3 PCs on which GRLS_grls5ZUT2BYY scores most extreme, with the 3 highest-loading SNPs on each. Foundation for the future genome-ring visualization.

PC82 z = -3.11
  • chr1:68,097,128 loading 0.0396
  • chr1:69,785,342 loading -0.0385
  • chr1:70,040,058 loading 0.0383
PC91 z = -2.58
  • chr10:1,924,717 loading 0.0382
  • chr10:1,676,762 loading 0.0377
  • chr30:3,709,721 loading 0.0366
PC199 z = 2.54
  • chr3:72,396,064 loading 0.0333
  • chr10:25,699,634 loading 0.0321
  • chr13:22,942,852 loading 0.0315
Ancestry reconstruction error: 0.57
Back to the Atlas →