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Cosmic medallion portrait of GRLS_grls69OEY100, a Golden Retriever
AI portrait
About this portrait

This portrait was algorithmically built from this dog's genome: their genotype at 8 morphology loci (coat length, curl, color, ear set, body size, head shape, skull, furnishings) plus their position within the 14,478-dog atlas. The same dog always reproduces the same portrait. A different dog with different alleles gets a different portrait.

GRLS_grls69OEY100

GRLS_grls69OEY100 is a Golden Retriever from the GRLS research cohort. One of 14,478 dogs who built the atlas.

See GRLS_grls69OEY100 in the atlas
About GRLS_grls69OEY100

GRLS_grls69OEY100 sits well inside the Golden Retriever cluster - a fairly typical example.

  • Predicted large by the six body-size genes the atlas reads (IGF1, HMGA2, SMAD2, LCORL, STC2, ADAMTS17).
  • Standard leg length. No chondrodysplasia retrogene variant.
  • Wire-coat furnishings - the eyebrow + beard variant at RSPO2.
GRLS_grls69OEY100's nearest neighbors

The five dogs in the atlas whose genomes sit closest to GRLS_grls69OEY100's. Click any of them to keep exploring.

  1. PILOT_grlsLOMQBXZZ Golden Retriever 27.45
  2. PFZ4E01_PFZ4E01 Golden Retriever 32.91
  3. GRLS_grlsVX7VGDWW Golden Retriever 33.32
  4. GRLS_grlsNV52VJBB Golden Retriever 33.64
  5. GRLS_grlsUTIBW399 Golden Retriever 33.87
GRLS_grls69OEY100's breed

GRLS_grls69OEY100 sits in the Golden Retriever cluster, with genome overlap to Labrador Retriever - sister breeds nearby in the atlas.

Breed similarity from non-negative least squares against 91 breed centroids in PCA-256 space, corrected for atlas sample-size imbalance. Without correction, Goldens (22% of the atlas) leak into every dog's raw NNLS breakdown; with it, the bias falls out. Raw fractions stay in the dataset for re-derivation. Methodology.

  1. Golden Retriever 82%
  2. Labrador Retriever 18%
Source

From the Golden Retriever Lifetime Study . Breed-page reference: Golden Retriever.

Full genotype detail
click to expand

The actual allele call at each locus's representative SNP for this dog. Each gene name links to its page where you can see the per-breed frequency table and the direction of effect.

Body size
IGF1 A/A
HMGA2 T/T
SMAD2 G/G
LCORL G/G
STC2 A/A
ADAMTS17 G/A
Leg length
FGF4·CFA18 C/C
FGF4·CFA12 C/C
Coat
RSPO2 T/T
FGF5 C/C
KRT71 C/C
MC1R T/T
Ear set
MSRB3 A/A
Skull shape
BMP3 T/T
SMOC2 A/A
Technical details
click to expand

The numbers behind the placement. Useful for researchers reproducing the math or debugging an unexpected position; not interesting to most readers.

UMAP-3D position
x 7.276
y 11.169
z 8.310
PCA-256 distance from breed centroid
34.41
Outlier percentile in breed
50
lower = more typical
Top-3 principal components by |z|

The 3 PCs on which GRLS_grls69OEY100 scores most extreme, with the 3 highest-loading SNPs on each. Foundation for the future genome-ring visualization.

PC43 z = -3.62
  • chr28:11,007,373 loading 0.0365
  • chr28:5,497,677 loading 0.0343
  • chr7:43,226,466 loading 0.0325
PC180 z = 3.54
  • chr25:3,195,036 loading 0.0485
  • chr25:4,418,784 loading -0.0459
  • chr25:3,349,555 loading 0.0401
PC113 z = -2.81
  • chr22:17,237,143 loading 0.0474
  • chr22:17,327,096 loading 0.0458
  • chr1:53,531,199 loading 0.0436
Ancestry reconstruction error: 0.60
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