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Cosmic medallion portrait of GRLS_grlsB9UB6ZEE, a Golden Retriever
AI portrait
About this portrait

This portrait was algorithmically built from this dog's genome: their genotype at 8 morphology loci (coat length, curl, color, ear set, body size, head shape, skull, furnishings) plus their position within the 14,478-dog atlas. The same dog always reproduces the same portrait. A different dog with different alleles gets a different portrait.

GRLS_grlsB9UB6ZEE

GRLS_grlsB9UB6ZEE is a Golden Retriever from the GRLS research cohort. One of 14,478 dogs who built the atlas.

See GRLS_grlsB9UB6ZEE in the atlas
About GRLS_grlsB9UB6ZEE

GRLS_grlsB9UB6ZEE sits well inside the Golden Retriever cluster - a fairly typical example.

  • Predicted large by the six body-size genes the atlas reads (IGF1, HMGA2, SMAD2, LCORL, STC2, ADAMTS17).
  • Standard leg length. No chondrodysplasia retrogene variant.
  • Carrier of the RSPO2 wire-coat variant (single copy).
GRLS_grlsB9UB6ZEE's nearest neighbors

The five dogs in the atlas whose genomes sit closest to GRLS_grlsB9UB6ZEE's. Click any of them to keep exploring.

  1. GRLS_grls2MQWMVHH Golden Retriever 33.81
  2. GRLS_grls80GOJXFF Golden Retriever 34.70
  3. GRLS_grls83VQG44 Golden Retriever 35.10
  4. Oldies_grls8ea6a433 Golden Retriever 35.26
  5. GRLS_grlsONZRBVGG Golden Retriever 35.27
GRLS_grlsB9UB6ZEE's breed

GRLS_grlsB9UB6ZEE sits in the Golden Retriever cluster, with genome overlap to Labrador Retriever - sister breeds nearby in the atlas.

Breed similarity from non-negative least squares against 91 breed centroids in PCA-256 space, corrected for atlas sample-size imbalance. Without correction, Goldens (22% of the atlas) leak into every dog's raw NNLS breakdown; with it, the bias falls out. Raw fractions stay in the dataset for re-derivation. Methodology.

  1. Golden Retriever 85%
  2. Labrador Retriever 15%
Source

From the Golden Retriever Lifetime Study . Breed-page reference: Golden Retriever.

Full genotype detail
click to expand

The actual allele call at each locus's representative SNP for this dog. Each gene name links to its page where you can see the per-breed frequency table and the direction of effect.

Body size
IGF1 C/A
HMGA2 T/T
SMAD2 G/G
LCORL G/G
STC2 A/A
ADAMTS17 G/A
Leg length
FGF4·CFA18 C/C
FGF4·CFA12 C/C
Coat
RSPO2 C/T
FGF5 C/C
KRT71 C/C
MC1R T/C
Ear set
MSRB3 A/A
Skull shape
BMP3 C/C
SMOC2 G/G
Technical details
click to expand

The numbers behind the placement. Useful for researchers reproducing the math or debugging an unexpected position; not interesting to most readers.

UMAP-3D position
x 8.776
y 9.811
z 8.370
PCA-256 distance from breed centroid
34.31
Outlier percentile in breed
49
lower = more typical
Top-3 principal components by |z|

The 3 PCs on which GRLS_grlsB9UB6ZEE scores most extreme, with the 3 highest-loading SNPs on each. Foundation for the future genome-ring visualization.

PC110 z = 3.26
  • chr25:1,742,133 loading 0.0401
  • chr28:2,607,542 loading 0.0393
  • chr25:1,819,027 loading 0.0392
PC118 z = 3.06
  • chr13:4,612,002 loading 0.0350
  • chr13:4,346,598 loading 0.0329
  • chr10:6,497,921 loading 0.0313
PC219 z = -2.95
  • chr11:18,600,601 loading 0.0312
  • chr14:14,201,384 loading 0.0302
  • chr3:6,077,116 loading -0.0298
Ancestry reconstruction error: 0.56
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