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Cosmic medallion portrait of GRLS_grlsBIVYMAJJ, a Golden Retriever
AI portrait
About this portrait

This portrait was algorithmically built from this dog's genome: their genotype at 8 morphology loci (coat length, curl, color, ear set, body size, head shape, skull, furnishings) plus their position within the 14,478-dog atlas. The same dog always reproduces the same portrait. A different dog with different alleles gets a different portrait.

GRLS_grlsBIVYMAJJ

GRLS_grlsBIVYMAJJ is a Golden Retriever from the GRLS research cohort. One of 14,478 dogs who built the atlas.

See GRLS_grlsBIVYMAJJ in the atlas
About GRLS_grlsBIVYMAJJ

GRLS_grlsBIVYMAJJ sits near the center of the Golden Retriever cluster - genetically very typical for the breed.

  • Predicted giant by the six body-size genes the atlas reads (IGF1, HMGA2, SMAD2, LCORL, STC2, ADAMTS17).
  • Standard leg length. No chondrodysplasia retrogene variant.
  • Carrier of the RSPO2 wire-coat variant (single copy).
GRLS_grlsBIVYMAJJ's nearest neighbors

The five dogs in the atlas whose genomes sit closest to GRLS_grlsBIVYMAJJ's. Click any of them to keep exploring.

  1. GRLS_grlsD1AOQMM Golden Retriever 22.60
  2. GRLS_grlsIBON0011 Golden Retriever 23.75
  3. GRLS_grlsIU7GFUBB Golden Retriever 26.91
  4. GRLS_grls4ZRBRLGG Golden Retriever 27.62
  5. GRLS_grlsT54MH6FF Golden Retriever 27.68
GRLS_grlsBIVYMAJJ's breed

GRLS_grlsBIVYMAJJ sits in the Golden Retriever cluster, with genome overlap to Labrador Retriever - sister breeds nearby in the atlas.

Breed similarity from non-negative least squares against 91 breed centroids in PCA-256 space, corrected for atlas sample-size imbalance. Without correction, Goldens (22% of the atlas) leak into every dog's raw NNLS breakdown; with it, the bias falls out. Raw fractions stay in the dataset for re-derivation. Methodology.

  1. Golden Retriever 81%
  2. Labrador Retriever 19%
Source

From the Golden Retriever Lifetime Study . Breed-page reference: Golden Retriever.

Full genotype detail
click to expand

The actual allele call at each locus's representative SNP for this dog. Each gene name links to its page where you can see the per-breed frequency table and the direction of effect.

Body size
IGF1 C/A
HMGA2 T/T
SMAD2 G/G
LCORL A/G
STC2 A/A
ADAMTS17 A/A
Leg length
FGF4·CFA18 C/C
FGF4·CFA12 C/C
Coat
RSPO2 C/T
FGF5 C/C
KRT71 C/C
MC1R T/T
Ear set
MSRB3 A/A
Skull shape
BMP3 T/T
SMOC2 G/G
Technical details
click to expand

The numbers behind the placement. Useful for researchers reproducing the math or debugging an unexpected position; not interesting to most readers.

UMAP-3D position
x 6.920
y 11.346
z 7.722
PCA-256 distance from breed centroid
28.82
Outlier percentile in breed
19
lower = more typical
Top-3 principal components by |z|

The 3 PCs on which GRLS_grlsBIVYMAJJ scores most extreme, with the 3 highest-loading SNPs on each. Foundation for the future genome-ring visualization.

PC112 z = -2.31
  • chr3:6,565,383 loading 0.0418
  • chr18:10,714,022 loading 0.0387
  • chr3:6,720,531 loading 0.0365
PC200 z = 2.21
  • chr26:9,892,015 loading 0.0403
  • chr19:3,081,516 loading 0.0393
  • chr26:3,675,581 loading 0.0362
PC174 z = 1.99
  • chr19:6,752,118 loading 0.0369
  • chr24:5,019,735 loading -0.0328
  • chr4:69,338,731 loading -0.0309
Ancestry reconstruction error: 0.56
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