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Cosmic medallion portrait of GRLS_grlsC5YM2HWW, a Golden Retriever
AI portrait
About this portrait

This portrait was algorithmically built from this dog's genome: their genotype at 8 morphology loci (coat length, curl, color, ear set, body size, head shape, skull, furnishings) plus their position within the 14,478-dog atlas. The same dog always reproduces the same portrait. A different dog with different alleles gets a different portrait.

GRLS_grlsC5YM2HWW

GRLS_grlsC5YM2HWW is a Golden Retriever from the GRLS research cohort. One of 14,478 dogs who built the atlas.

See GRLS_grlsC5YM2HWW in the atlas
About GRLS_grlsC5YM2HWW

GRLS_grlsC5YM2HWW is a notable Golden Retriever - distinctive within the breed.

  • Predicted large by the six body-size genes the atlas reads (IGF1, HMGA2, SMAD2, LCORL, STC2, ADAMTS17).
  • Standard leg length. No chondrodysplasia retrogene variant.
  • Wire-coat furnishings - the eyebrow + beard variant at RSPO2.
GRLS_grlsC5YM2HWW's nearest neighbors

The five dogs in the atlas whose genomes sit closest to GRLS_grlsC5YM2HWW's. Click any of them to keep exploring.

  1. GRLS_grls1LNR2C22 Golden Retriever 26.45
  2. GRLS_grls6GQLWCVV Golden Retriever 30.47
  3. GRLS_grlsMQHRNQYY Golden Retriever 36.27
  4. PILOT_grls54WONKZZ Golden Retriever 36.33
  5. PFZ9F09_PFZ9F09 Golden Retriever 37.05
GRLS_grlsC5YM2HWW's breed

GRLS_grlsC5YM2HWW sits in the Golden Retriever cluster, with genome overlap to Labrador Retriever - sister breeds nearby in the atlas.

Breed similarity from non-negative least squares against 91 breed centroids in PCA-256 space, corrected for atlas sample-size imbalance. Without correction, Goldens (22% of the atlas) leak into every dog's raw NNLS breakdown; with it, the bias falls out. Raw fractions stay in the dataset for re-derivation. Methodology.

  1. Golden Retriever 78%
  2. Labrador Retriever 22%
Source

From the Golden Retriever Lifetime Study . Breed-page reference: Golden Retriever.

Full genotype detail
click to expand

The actual allele call at each locus's representative SNP for this dog. Each gene name links to its page where you can see the per-breed frequency table and the direction of effect.

Body size
IGF1 C/C
HMGA2 C/T
SMAD2 G/G
LCORL G/G
STC2 A/A
ADAMTS17 G/G
Leg length
FGF4·CFA18 C/C
FGF4·CFA12 C/C
Coat
RSPO2 T/T
FGF5 T/T
KRT71 C/C
MC1R –
Ear set
MSRB3 A/A
Skull shape
BMP3 T/T
SMOC2 G/G
Technical details
click to expand

The numbers behind the placement. Useful for researchers reproducing the math or debugging an unexpected position; not interesting to most readers.

UMAP-3D position
x 9.434
y 9.216
z 8.752
PCA-256 distance from breed centroid
42.81
Outlier percentile in breed
86
lower = more typical
Top-3 principal components by |z|

The 3 PCs on which GRLS_grlsC5YM2HWW scores most extreme, with the 3 highest-loading SNPs on each. Foundation for the future genome-ring visualization.

PC113 z = -3.92
  • chr22:17,237,143 loading 0.0474
  • chr22:17,327,096 loading 0.0458
  • chr1:53,531,199 loading 0.0436
PC43 z = 3.57
  • chr28:11,007,373 loading 0.0365
  • chr28:5,497,677 loading 0.0343
  • chr7:43,226,466 loading 0.0325
PC219 z = 2.74
  • chr11:18,600,601 loading 0.0312
  • chr14:14,201,384 loading 0.0302
  • chr3:6,077,116 loading -0.0298
Ancestry reconstruction error: 0.63
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