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Cosmic medallion portrait of GRLS_grlsCCG2I3EE, a Golden Retriever
AI portrait
About this portrait

This portrait was algorithmically built from this dog's genome: their genotype at 8 morphology loci (coat length, curl, color, ear set, body size, head shape, skull, furnishings) plus their position within the 14,478-dog atlas. The same dog always reproduces the same portrait. A different dog with different alleles gets a different portrait.

GRLS_grlsCCG2I3EE

GRLS_grlsCCG2I3EE is a Golden Retriever from the GRLS research cohort. One of 14,478 dogs who built the atlas.

See GRLS_grlsCCG2I3EE in the atlas
About GRLS_grlsCCG2I3EE

GRLS_grlsCCG2I3EE sits at the edge of the Golden Retriever cluster but still well within it.

  • Predicted large by the six body-size genes the atlas reads (IGF1, HMGA2, SMAD2, LCORL, STC2, ADAMTS17).
  • Standard leg length. No chondrodysplasia retrogene variant.
  • Carrier of the RSPO2 wire-coat variant (single copy).
GRLS_grlsCCG2I3EE's nearest neighbors

The five dogs in the atlas whose genomes sit closest to GRLS_grlsCCG2I3EE's. Click any of them to keep exploring.

  1. GRLS_grls879JEY55 Golden Retriever 31.65
  2. GRLS_grlsJ2SZ35II Golden Retriever 32.43
  3. GRLS_grls80GOJXFF Golden Retriever 33.82
  4. GRLS_grlsU3OJ2BLL Golden Retriever 33.95
  5. Oldies_grlsa0b3c0c5 Golden Retriever 34.01
GRLS_grlsCCG2I3EE's breed

GRLS_grlsCCG2I3EE sits in the Golden Retriever cluster, with genome overlap to Labrador Retriever - sister breeds nearby in the atlas.

Breed similarity from non-negative least squares against 91 breed centroids in PCA-256 space, corrected for atlas sample-size imbalance. Without correction, Goldens (22% of the atlas) leak into every dog's raw NNLS breakdown; with it, the bias falls out. Raw fractions stay in the dataset for re-derivation. Methodology.

  1. Golden Retriever 79%
  2. Labrador Retriever 21%
Source

From the Golden Retriever Lifetime Study . Breed-page reference: Golden Retriever.

Full genotype detail
click to expand

The actual allele call at each locus's representative SNP for this dog. Each gene name links to its page where you can see the per-breed frequency table and the direction of effect.

Body size
IGF1 C/A
HMGA2 T/T
SMAD2 G/G
LCORL G/G
STC2 A/A
ADAMTS17 G/G
Leg length
FGF4·CFA18 C/C
FGF4·CFA12 C/C
Coat
RSPO2 C/T
FGF5 T/C
KRT71 C/C
MC1R T/T
Ear set
MSRB3 A/A
Skull shape
BMP3 C/T
SMOC2 G/G
Technical details
click to expand

The numbers behind the placement. Useful for researchers reproducing the math or debugging an unexpected position; not interesting to most readers.

UMAP-3D position
x 9.375
y 9.234
z 8.520
PCA-256 distance from breed centroid
36.54
Outlier percentile in breed
61
lower = more typical
Top-3 principal components by |z|

The 3 PCs on which GRLS_grlsCCG2I3EE scores most extreme, with the 3 highest-loading SNPs on each. Foundation for the future genome-ring visualization.

PC193 z = -2.98
  • chr19:1,162,032 loading 0.0555
  • chr19:1,420,658 loading 0.0489
  • chr19:1,685,081 loading -0.0433
PC140 z = -2.79
  • chr19:4,037,398 loading 0.0415
  • chr19:5,321,387 loading 0.0400
  • chr19:5,388,895 loading -0.0395
PC103 z = 2.54
  • chr1:73,451,600 loading 0.0356
  • chr1:69,785,342 loading 0.0343
  • chr18:18,333,364 loading 0.0329
Ancestry reconstruction error: 0.58
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