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Cosmic medallion portrait of GRLS_grlsCIN38MFF, a Golden Retriever
AI portrait
About this portrait

This portrait was algorithmically built from this dog's genome: their genotype at 8 morphology loci (coat length, curl, color, ear set, body size, head shape, skull, furnishings) plus their position within the 14,478-dog atlas. The same dog always reproduces the same portrait. A different dog with different alleles gets a different portrait.

GRLS_grlsCIN38MFF

GRLS_grlsCIN38MFF is a Golden Retriever from the GRLS research cohort. One of 14,478 dogs who built the atlas.

See GRLS_grlsCIN38MFF in the atlas
About GRLS_grlsCIN38MFF

GRLS_grlsCIN38MFF is a notable Golden Retriever - distinctive within the breed.

  • Predicted large by the six body-size genes the atlas reads (IGF1, HMGA2, SMAD2, LCORL, STC2, ADAMTS17).
  • Standard leg length. No chondrodysplasia retrogene variant.
  • Carrier of the RSPO2 wire-coat variant (single copy).
GRLS_grlsCIN38MFF's nearest neighbors

The five dogs in the atlas whose genomes sit closest to GRLS_grlsCIN38MFF's. Click any of them to keep exploring.

  1. GRLS_grlsGB9P9CGG Golden Retriever 32.34
  2. GRLS_grlsNZ3N1DGG Golden Retriever 32.90
  3. GRLS_grls8MXMWKDD Golden Retriever 34.03
  4. GRLS_grlsH2L2L7BB Golden Retriever 34.24
  5. GRLS_grlsLLH2XVSS Golden Retriever 36.05
GRLS_grlsCIN38MFF's breed

GRLS_grlsCIN38MFF sits in the Golden Retriever cluster, with genome overlap to Labrador Retriever - sister breeds nearby in the atlas.

Breed similarity from non-negative least squares against 91 breed centroids in PCA-256 space, corrected for atlas sample-size imbalance. Without correction, Goldens (22% of the atlas) leak into every dog's raw NNLS breakdown; with it, the bias falls out. Raw fractions stay in the dataset for re-derivation. Methodology.

  1. Golden Retriever 80%
  2. Labrador Retriever 20%
Source

From the Golden Retriever Lifetime Study . Breed-page reference: Golden Retriever.

Full genotype detail
click to expand

The actual allele call at each locus's representative SNP for this dog. Each gene name links to its page where you can see the per-breed frequency table and the direction of effect.

Body size
IGF1 C/C
HMGA2 T/T
SMAD2 G/G
LCORL G/G
STC2 A/A
ADAMTS17 G/G
Leg length
FGF4·CFA18 C/C
FGF4·CFA12 C/C
Coat
RSPO2 C/T
FGF5 C/C
KRT71 C/C
MC1R T/C
Ear set
MSRB3 A/A
Skull shape
BMP3 C/C
SMOC2 G/G
Technical details
click to expand

The numbers behind the placement. Useful for researchers reproducing the math or debugging an unexpected position; not interesting to most readers.

UMAP-3D position
x 9.121
y 10.209
z 9.564
PCA-256 distance from breed centroid
43.61
Outlier percentile in breed
88
lower = more typical
Top-3 principal components by |z|

The 3 PCs on which GRLS_grlsCIN38MFF scores most extreme, with the 3 highest-loading SNPs on each. Foundation for the future genome-ring visualization.

PC82 z = -3.70
  • chr1:68,097,128 loading 0.0396
  • chr1:69,785,342 loading -0.0385
  • chr1:70,040,058 loading 0.0383
PC90 z = 3.45
  • chr22:398,599 loading 0.0377
  • chr29:27,583,617 loading -0.0367
  • chr22:25,742,519 loading -0.0349
PC79 z = 3.08
  • chr3:7,389,779 loading 0.0444
  • chr3:6,720,531 loading -0.0378
  • chr3:6,392,552 loading -0.0378
Ancestry reconstruction error: 0.64
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