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Cosmic medallion portrait of GRLS_grlsE9J2YZTT, a Golden Retriever
AI portrait
About this portrait

This portrait was algorithmically built from this dog's genome: their genotype at 8 morphology loci (coat length, curl, color, ear set, body size, head shape, skull, furnishings) plus their position within the 14,478-dog atlas. The same dog always reproduces the same portrait. A different dog with different alleles gets a different portrait.

GRLS_grlsE9J2YZTT

GRLS_grlsE9J2YZTT is a Golden Retriever from the GRLS research cohort. One of 14,478 dogs who built the atlas.

See GRLS_grlsE9J2YZTT in the atlas
About GRLS_grlsE9J2YZTT

GRLS_grlsE9J2YZTT sits at the edge of the Golden Retriever cluster but still well within it.

  • Predicted large by the six body-size genes the atlas reads (IGF1, HMGA2, SMAD2, LCORL, STC2, ADAMTS17).
  • Standard leg length. No chondrodysplasia retrogene variant.
  • Carrier of the RSPO2 wire-coat variant (single copy).
GRLS_grlsE9J2YZTT's nearest neighbors

The five dogs in the atlas whose genomes sit closest to GRLS_grlsE9J2YZTT's. Click any of them to keep exploring.

  1. GRLS_grlsEFGZ0200 Golden Retriever 25.80
  2. GRLS_grlsFSBDGO11 Golden Retriever 26.48
  3. GRLS_grlsSD7E777 Golden Retriever 32.54
  4. GRLS_grlsMG8OL6DD Golden Retriever 34.51
  5. GRLS_grlsI8I5YHQQ Golden Retriever 34.94
GRLS_grlsE9J2YZTT's breed

GRLS_grlsE9J2YZTT sits in the Golden Retriever cluster, with genome overlap to Labrador Retriever - sister breeds nearby in the atlas.

Breed similarity from non-negative least squares against 91 breed centroids in PCA-256 space, corrected for atlas sample-size imbalance. Without correction, Goldens (22% of the atlas) leak into every dog's raw NNLS breakdown; with it, the bias falls out. Raw fractions stay in the dataset for re-derivation. Methodology.

  1. Golden Retriever 79%
  2. Labrador Retriever 21%
Source

From the Golden Retriever Lifetime Study . Breed-page reference: Golden Retriever.

Full genotype detail
click to expand

The actual allele call at each locus's representative SNP for this dog. Each gene name links to its page where you can see the per-breed frequency table and the direction of effect.

Body size
IGF1 C/C
HMGA2 T/T
SMAD2 A/G
LCORL G/G
STC2 A/A
ADAMTS17 G/G
Leg length
FGF4·CFA18 C/C
FGF4·CFA12 C/C
Coat
RSPO2 C/T
FGF5 C/C
KRT71 C/C
MC1R T/C
Ear set
MSRB3 A/A
Skull shape
BMP3 C/C
SMOC2 G/G
Technical details
click to expand

The numbers behind the placement. Useful for researchers reproducing the math or debugging an unexpected position; not interesting to most readers.

UMAP-3D position
x 8.880
y 9.820
z 8.919
PCA-256 distance from breed centroid
34.49
Outlier percentile in breed
50
lower = more typical
Top-3 principal components by |z|

The 3 PCs on which GRLS_grlsE9J2YZTT scores most extreme, with the 3 highest-loading SNPs on each. Foundation for the future genome-ring visualization.

PC217 z = 3.38
  • chr3:37,847,773 loading 0.0404
  • chr3:37,885,813 loading 0.0400
  • chr3:38,305,313 loading 0.0391
PC226 z = -3.33
  • chr21:30,613,458 loading 0.0378
  • chr28:5,497,677 loading 0.0367
  • chr28:5,428,661 loading 0.0358
PC146 z = -3.11
  • chr2:41,835,446 loading 0.0357
  • chr2:40,086,289 loading 0.0341
  • chr22:28,657,814 loading -0.0335
Ancestry reconstruction error: 0.57
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