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Cosmic medallion portrait of GRLS_grlsEOQD1JJ, a Golden Retriever
AI portrait
About this portrait

This portrait was algorithmically built from this dog's genome: their genotype at 8 morphology loci (coat length, curl, color, ear set, body size, head shape, skull, furnishings) plus their position within the 14,478-dog atlas. The same dog always reproduces the same portrait. A different dog with different alleles gets a different portrait.

GRLS_grlsEOQD1JJ

GRLS_grlsEOQD1JJ is a Golden Retriever from the GRLS research cohort. One of 14,478 dogs who built the atlas.

See GRLS_grlsEOQD1JJ in the atlas
About GRLS_grlsEOQD1JJ

GRLS_grlsEOQD1JJ sits well inside the Golden Retriever cluster - a fairly typical example.

  • Predicted large by the six body-size genes the atlas reads (IGF1, HMGA2, SMAD2, LCORL, STC2, ADAMTS17).
  • Standard leg length. No chondrodysplasia retrogene variant.
  • Carrier of the RSPO2 wire-coat variant (single copy).
GRLS_grlsEOQD1JJ's nearest neighbors

The five dogs in the atlas whose genomes sit closest to GRLS_grlsEOQD1JJ's. Click any of them to keep exploring.

  1. GRLS_grlsLMFO85WW Golden Retriever 28.52
  2. GRLS_grlsBKWLR0SS Golden Retriever 31.34
  3. GRLS_grlsMJU7ED Golden Retriever 31.54
  4. GRLS_grlsZYI0K6LL Golden Retriever 31.70
  5. GRLS_grls9INU92LL Golden Retriever 33.45
GRLS_grlsEOQD1JJ's breed

GRLS_grlsEOQD1JJ sits in the Golden Retriever cluster, with genome overlap to Labrador Retriever - sister breeds nearby in the atlas.

Breed similarity from non-negative least squares against 91 breed centroids in PCA-256 space, corrected for atlas sample-size imbalance. Without correction, Goldens (22% of the atlas) leak into every dog's raw NNLS breakdown; with it, the bias falls out. Raw fractions stay in the dataset for re-derivation. Methodology.

  1. Golden Retriever 79%
  2. Labrador Retriever 21%
Source

From the Golden Retriever Lifetime Study . Breed-page reference: Golden Retriever.

Full genotype detail
click to expand

The actual allele call at each locus's representative SNP for this dog. Each gene name links to its page where you can see the per-breed frequency table and the direction of effect.

Body size
IGF1 C/C
HMGA2 T/T
SMAD2 G/G
LCORL G/G
STC2 A/A
ADAMTS17 G/G
Leg length
FGF4·CFA18 C/C
FGF4·CFA12 C/C
Coat
RSPO2 C/T
FGF5 T/C
KRT71 C/C
MC1R T/C
Ear set
MSRB3 A/A
Skull shape
BMP3 T/T
SMOC2 G/G
Technical details
click to expand

The numbers behind the placement. Useful for researchers reproducing the math or debugging an unexpected position; not interesting to most readers.

UMAP-3D position
x 9.210
y 9.952
z 7.774
PCA-256 distance from breed centroid
34.14
Outlier percentile in breed
48
lower = more typical
Top-3 principal components by |z|

The 3 PCs on which GRLS_grlsEOQD1JJ scores most extreme, with the 3 highest-loading SNPs on each. Foundation for the future genome-ring visualization.

PC135 z = -3.39
  • chr8:33,499,010 loading 0.0341
  • chr6:30,409,356 loading -0.0338
  • chr34:15,382,542 loading -0.0330
PC191 z = -3.32
  • chr19:11,721,356 loading 0.0330
  • chr20:8,205,745 loading 0.0329
  • chr25:2,138,835 loading -0.0328
PC107 z = 3.00
  • chr10:6,497,921 loading 0.0390
  • chr3:5,565,848 loading -0.0351
  • chr3:6,720,531 loading 0.0336
Ancestry reconstruction error: 0.58
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