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Cosmic medallion portrait of GRLS_grlsF9CWK9VV, a Golden Retriever
AI portrait
About this portrait

This portrait was algorithmically built from this dog's genome: their genotype at 8 morphology loci (coat length, curl, color, ear set, body size, head shape, skull, furnishings) plus their position within the 14,478-dog atlas. The same dog always reproduces the same portrait. A different dog with different alleles gets a different portrait.

GRLS_grlsF9CWK9VV

GRLS_grlsF9CWK9VV is a Golden Retriever from the GRLS research cohort. One of 14,478 dogs who built the atlas.

See GRLS_grlsF9CWK9VV in the atlas
About GRLS_grlsF9CWK9VV

GRLS_grlsF9CWK9VV sits well inside the Golden Retriever cluster - a fairly typical example.

  • Predicted large by the six body-size genes the atlas reads (IGF1, HMGA2, SMAD2, LCORL, STC2, ADAMTS17).
  • Standard leg length. No chondrodysplasia retrogene variant.
  • Wire-coat furnishings - the eyebrow + beard variant at RSPO2.
GRLS_grlsF9CWK9VV's nearest neighbors

The five dogs in the atlas whose genomes sit closest to GRLS_grlsF9CWK9VV's. Click any of them to keep exploring.

  1. GRLS_grls71IO1144 Golden Retriever 31.75
  2. GRLS_grlsC8TTG8NN Golden Retriever 33.18
  3. PILOT_grlsWUPSKEZZ Golden Retriever 33.34
  4. GRLS_grlsSCESWCMM Golden Retriever 34.39
  5. PFZ43B11_PFZ43B11 Golden Retriever 34.68
GRLS_grlsF9CWK9VV's breed

GRLS_grlsF9CWK9VV sits in the Golden Retriever cluster, with genome overlap to Labrador Retriever - sister breeds nearby in the atlas.

Breed similarity from non-negative least squares against 91 breed centroids in PCA-256 space, corrected for atlas sample-size imbalance. Without correction, Goldens (22% of the atlas) leak into every dog's raw NNLS breakdown; with it, the bias falls out. Raw fractions stay in the dataset for re-derivation. Methodology.

  1. Golden Retriever 83%
  2. Labrador Retriever 17%
Source

From the Golden Retriever Lifetime Study . Breed-page reference: Golden Retriever.

Full genotype detail
click to expand

The actual allele call at each locus's representative SNP for this dog. Each gene name links to its page where you can see the per-breed frequency table and the direction of effect.

Body size
IGF1 C/A
HMGA2 C/T
SMAD2 G/G
LCORL G/G
STC2 A/A
ADAMTS17 G/A
Leg length
FGF4·CFA18 C/C
FGF4·CFA12 C/C
Coat
RSPO2 T/T
FGF5 T/C
KRT71 C/C
MC1R T/T
Ear set
MSRB3 A/A
Skull shape
BMP3 C/T
SMOC2 G/G
Technical details
click to expand

The numbers behind the placement. Useful for researchers reproducing the math or debugging an unexpected position; not interesting to most readers.

UMAP-3D position
x 8.965
y 9.791
z 8.574
PCA-256 distance from breed centroid
32.99
Outlier percentile in breed
42
lower = more typical
Top-3 principal components by |z|

The 3 PCs on which GRLS_grlsF9CWK9VV scores most extreme, with the 3 highest-loading SNPs on each. Foundation for the future genome-ring visualization.

PC171 z = 2.69
  • chr1:99,975,270 loading 0.0421
  • chr1:99,774,502 loading 0.0419
  • chr1:99,902,496 loading 0.0354
PC136 z = -2.64
  • chr13:1,840,654 loading 0.0379
  • chr19:3,379,845 loading -0.0360
  • chr26:3,121,537 loading -0.0358
PC152 z = -2.52
  • chr25:28,621,324 loading 0.0364
  • chr20:11,911,649 loading 0.0323
  • chr20:7,517,267 loading -0.0311
Ancestry reconstruction error: 0.56
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