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Cosmic medallion portrait of GRLS_grlsGHZTRXLL, a Golden Retriever
AI portrait
About this portrait

This portrait was algorithmically built from this dog's genome: their genotype at 8 morphology loci (coat length, curl, color, ear set, body size, head shape, skull, furnishings) plus their position within the 14,478-dog atlas. The same dog always reproduces the same portrait. A different dog with different alleles gets a different portrait.

GRLS_grlsGHZTRXLL

GRLS_grlsGHZTRXLL is a Golden Retriever from the GRLS research cohort. One of 14,478 dogs who built the atlas.

See GRLS_grlsGHZTRXLL in the atlas
About GRLS_grlsGHZTRXLL

GRLS_grlsGHZTRXLL sits well inside the Golden Retriever cluster - a fairly typical example.

  • Predicted large by the six body-size genes the atlas reads (IGF1, HMGA2, SMAD2, LCORL, STC2, ADAMTS17).
  • Standard leg length. No chondrodysplasia retrogene variant.
  • Carrier of the RSPO2 wire-coat variant (single copy).
GRLS_grlsGHZTRXLL's nearest neighbors

The five dogs in the atlas whose genomes sit closest to GRLS_grlsGHZTRXLL's. Click any of them to keep exploring.

  1. GRLS_grlsPJVPX6LL Golden Retriever 28.49
  2. GRLS_grlsY3ZGDILL Golden Retriever 33.22
  3. GRLS_grls405NWMQQ Golden Retriever 33.79
  4. GRLS_grls48JENUHH Golden Retriever 33.83
  5. GRLS_grlsR0384BJJ Golden Retriever 33.95
GRLS_grlsGHZTRXLL's breed

GRLS_grlsGHZTRXLL sits in the Golden Retriever cluster, with genome overlap to Labrador Retriever - sister breeds nearby in the atlas.

Breed similarity from non-negative least squares against 91 breed centroids in PCA-256 space, corrected for atlas sample-size imbalance. Without correction, Goldens (22% of the atlas) leak into every dog's raw NNLS breakdown; with it, the bias falls out. Raw fractions stay in the dataset for re-derivation. Methodology.

  1. Golden Retriever 78%
  2. Labrador Retriever 22%
Source

From the Golden Retriever Lifetime Study . Breed-page reference: Golden Retriever.

Full genotype detail
click to expand

The actual allele call at each locus's representative SNP for this dog. Each gene name links to its page where you can see the per-breed frequency table and the direction of effect.

Body size
IGF1 C/A
HMGA2 C/T
SMAD2 G/G
LCORL G/G
STC2 A/A
ADAMTS17 G/A
Leg length
FGF4·CFA18 C/C
FGF4·CFA12 C/C
Coat
RSPO2 C/T
FGF5 C/C
KRT71 C/C
MC1R T/C
Ear set
MSRB3 A/A
Skull shape
BMP3 C/C
SMOC2 G/G
Technical details
click to expand

The numbers behind the placement. Useful for researchers reproducing the math or debugging an unexpected position; not interesting to most readers.

UMAP-3D position
x 9.728
y 9.855
z 8.775
PCA-256 distance from breed centroid
32.06
Outlier percentile in breed
38
lower = more typical
Top-3 principal components by |z|

The 3 PCs on which GRLS_grlsGHZTRXLL scores most extreme, with the 3 highest-loading SNPs on each. Foundation for the future genome-ring visualization.

PC87 z = 3.25
  • chr18:17,740,291 loading 0.0425
  • chr18:13,022,424 loading -0.0364
  • chr18:14,917,450 loading -0.0361
PC154 z = 3.23
  • chr34:1,972,619 loading 0.0431
  • chr34:1,533,247 loading 0.0397
  • chr34:2,125,452 loading 0.0365
PC199 z = -2.71
  • chr3:72,396,064 loading 0.0333
  • chr10:25,699,634 loading 0.0321
  • chr13:22,942,852 loading 0.0315
Ancestry reconstruction error: 0.54
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