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Cosmic medallion portrait of GRLS_grlsIIDCBQ00, a Golden Retriever
AI portrait
About this portrait

This portrait was algorithmically built from this dog's genome: their genotype at 8 morphology loci (coat length, curl, color, ear set, body size, head shape, skull, furnishings) plus their position within the 14,478-dog atlas. The same dog always reproduces the same portrait. A different dog with different alleles gets a different portrait.

GRLS_grlsIIDCBQ00

GRLS_grlsIIDCBQ00 is a Golden Retriever from the GRLS research cohort. One of 14,478 dogs who built the atlas.

See GRLS_grlsIIDCBQ00 in the atlas
About GRLS_grlsIIDCBQ00

GRLS_grlsIIDCBQ00 sits near the center of the Golden Retriever cluster - genetically very typical for the breed.

  • Predicted large by the six body-size genes the atlas reads (IGF1, HMGA2, SMAD2, LCORL, STC2, ADAMTS17).
  • Standard leg length. No chondrodysplasia retrogene variant.
  • Carrier of the RSPO2 wire-coat variant (single copy).
GRLS_grlsIIDCBQ00's nearest neighbors

The five dogs in the atlas whose genomes sit closest to GRLS_grlsIIDCBQ00's. Click any of them to keep exploring.

  1. GRLS_grlsBKKNA44 Golden Retriever 18.70
  2. GRLS_grlsCO0LHTKK Golden Retriever 22.61
  3. PILOT_grls9ZT06ZLL Golden Retriever 30.34
  4. GRLS_grlsRLC7RDEE Golden Retriever 30.53
  5. GRLS_grlsDGBTDGEE Golden Retriever 30.65
GRLS_grlsIIDCBQ00's breed

GRLS_grlsIIDCBQ00 sits in the Golden Retriever cluster, with genome overlap to Labrador Retriever - sister breeds nearby in the atlas.

Breed similarity from non-negative least squares against 91 breed centroids in PCA-256 space, corrected for atlas sample-size imbalance. Without correction, Goldens (22% of the atlas) leak into every dog's raw NNLS breakdown; with it, the bias falls out. Raw fractions stay in the dataset for re-derivation. Methodology.

  1. Golden Retriever 76%
  2. Labrador Retriever 24%
Source

From the Golden Retriever Lifetime Study . Breed-page reference: Golden Retriever.

Full genotype detail
click to expand

The actual allele call at each locus's representative SNP for this dog. Each gene name links to its page where you can see the per-breed frequency table and the direction of effect.

Body size
IGF1 C/A
HMGA2 C/T
SMAD2 G/G
LCORL G/G
STC2 A/A
ADAMTS17 G/A
Leg length
FGF4·CFA18 C/C
FGF4·CFA12 C/C
Coat
RSPO2 C/T
FGF5 C/C
KRT71 C/C
MC1R T/C
Ear set
MSRB3 A/A
Skull shape
BMP3 C/C
SMOC2 A/G
Technical details
click to expand

The numbers behind the placement. Useful for researchers reproducing the math or debugging an unexpected position; not interesting to most readers.

UMAP-3D position
x 7.498
y 11.198
z 8.189
PCA-256 distance from breed centroid
28.89
Outlier percentile in breed
20
lower = more typical
Top-3 principal components by |z|

The 3 PCs on which GRLS_grlsIIDCBQ00 scores most extreme, with the 3 highest-loading SNPs on each. Foundation for the future genome-ring visualization.

PC43 z = -2.53
  • chr28:11,007,373 loading 0.0365
  • chr28:5,497,677 loading 0.0343
  • chr7:43,226,466 loading 0.0325
PC218 z = -2.22
  • chr7:62,094,557 loading 0.0330
  • chr17:4,233,511 loading -0.0324
  • chr28:21,567,516 loading 0.0320
PC228 z = 2.21
  • chr25:25,192,682 loading 0.0383
  • chr24:37,936,747 loading 0.0329
  • chr25:20,642,955 loading -0.0315
Ancestry reconstruction error: 0.56
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