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Cosmic medallion portrait of GRLS_grlsJWMH29EE, a Golden Retriever
AI portrait
About this portrait

This portrait was algorithmically built from this dog's genome: their genotype at 8 morphology loci (coat length, curl, color, ear set, body size, head shape, skull, furnishings) plus their position within the 14,478-dog atlas. The same dog always reproduces the same portrait. A different dog with different alleles gets a different portrait.

GRLS_grlsJWMH29EE

GRLS_grlsJWMH29EE is a Golden Retriever from the GRLS research cohort. One of 14,478 dogs who built the atlas.

See GRLS_grlsJWMH29EE in the atlas
About GRLS_grlsJWMH29EE

GRLS_grlsJWMH29EE sits well inside the Golden Retriever cluster - a fairly typical example.

  • Predicted medium by the six body-size genes the atlas reads (IGF1, HMGA2, SMAD2, LCORL, STC2, ADAMTS17).
  • Standard leg length. No chondrodysplasia retrogene variant.
  • Smooth coat. No wire-furnishings variant at RSPO2.
GRLS_grlsJWMH29EE's nearest neighbors

The five dogs in the atlas whose genomes sit closest to GRLS_grlsJWMH29EE's. Click any of them to keep exploring.

  1. GRLS_grlsJTVXY4PP Golden Retriever 32.95
  2. GRLS_grlsC7EYGG66 Golden Retriever 33.18
  3. GRLS_grlsOESN6EII Golden Retriever 33.38
  4. GRLS_grlsO3TR4RHH Golden Retriever 34.62
  5. PILOT_grlsFIQS65WW Golden Retriever 35.22
GRLS_grlsJWMH29EE's breed

GRLS_grlsJWMH29EE sits in the Golden Retriever cluster, with genome overlap to Labrador Retriever - sister breeds nearby in the atlas.

Breed similarity from non-negative least squares against 91 breed centroids in PCA-256 space, corrected for atlas sample-size imbalance. Without correction, Goldens (22% of the atlas) leak into every dog's raw NNLS breakdown; with it, the bias falls out. Raw fractions stay in the dataset for re-derivation. Methodology.

  1. Golden Retriever 78%
  2. Labrador Retriever 22%
Source

From the Golden Retriever Lifetime Study . Breed-page reference: Golden Retriever.

Full genotype detail
click to expand

The actual allele call at each locus's representative SNP for this dog. Each gene name links to its page where you can see the per-breed frequency table and the direction of effect.

Body size
IGF1 A/A
HMGA2 T/T
SMAD2 G/G
LCORL G/G
STC2 A/A
ADAMTS17 G/G
Leg length
FGF4·CFA18 C/C
FGF4·CFA12 C/C
Coat
RSPO2 C/C
FGF5 C/C
KRT71 C/C
MC1R T/C
Ear set
MSRB3 A/A
Skull shape
BMP3 C/C
SMOC2 G/G
Technical details
click to expand

The numbers behind the placement. Useful for researchers reproducing the math or debugging an unexpected position; not interesting to most readers.

UMAP-3D position
x 8.645
y 9.729
z 8.545
PCA-256 distance from breed centroid
34.12
Outlier percentile in breed
48
lower = more typical
Top-3 principal components by |z|

The 3 PCs on which GRLS_grlsJWMH29EE scores most extreme, with the 3 highest-loading SNPs on each. Foundation for the future genome-ring visualization.

PC178 z = -3.37
  • chr1:96,988,408 loading 0.0367
  • chr25:3,927,722 loading -0.0336
  • chr25:4,418,784 loading 0.0319
PC129 z = -2.75
  • chr9:12,031,144 loading 0.0367
  • chr13:1,840,654 loading -0.0344
  • chr9:14,628,871 loading -0.0343
PC158 z = -2.63
  • chr1:69,893,718 loading 0.0314
  • chr1:64,453,595 loading -0.0313
  • chr8:29,102,271 loading -0.0309
Ancestry reconstruction error: 0.55
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