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Cosmic medallion portrait of GRLS_grlsLZCMH0KK, a Golden Retriever
AI portrait
About this portrait

This portrait was algorithmically built from this dog's genome: their genotype at 8 morphology loci (coat length, curl, color, ear set, body size, head shape, skull, furnishings) plus their position within the 14,478-dog atlas. The same dog always reproduces the same portrait. A different dog with different alleles gets a different portrait.

GRLS_grlsLZCMH0KK

GRLS_grlsLZCMH0KK is a Golden Retriever from the GRLS research cohort. One of 14,478 dogs who built the atlas.

See GRLS_grlsLZCMH0KK in the atlas
About GRLS_grlsLZCMH0KK

GRLS_grlsLZCMH0KK sits well inside the Golden Retriever cluster - a fairly typical example.

  • Predicted giant by the six body-size genes the atlas reads (IGF1, HMGA2, SMAD2, LCORL, STC2, ADAMTS17).
  • Standard leg length. No chondrodysplasia retrogene variant.
  • Carrier of the RSPO2 wire-coat variant (single copy).
GRLS_grlsLZCMH0KK's nearest neighbors

The five dogs in the atlas whose genomes sit closest to GRLS_grlsLZCMH0KK's. Click any of them to keep exploring.

  1. Oldies_grls04c7af94 Golden Retriever 20.41
  2. GRLS_grls82YV1J66 Golden Retriever 28.73
  3. GRLS_grlsA3GE0GG Golden Retriever 29.11
  4. PFZ4D08_PFZ4D08 Golden Retriever 29.45
  5. PILOT_grlsZ34975II Golden Retriever 29.77
GRLS_grlsLZCMH0KK's breed

GRLS_grlsLZCMH0KK sits in the Golden Retriever cluster, with genome overlap to Labrador Retriever - sister breeds nearby in the atlas.

Breed similarity from non-negative least squares against 91 breed centroids in PCA-256 space, corrected for atlas sample-size imbalance. Without correction, Goldens (22% of the atlas) leak into every dog's raw NNLS breakdown; with it, the bias falls out. Raw fractions stay in the dataset for re-derivation. Methodology.

  1. Golden Retriever 78%
  2. Labrador Retriever 22%
Source

From the Golden Retriever Lifetime Study . Breed-page reference: Golden Retriever.

Full genotype detail
click to expand

The actual allele call at each locus's representative SNP for this dog. Each gene name links to its page where you can see the per-breed frequency table and the direction of effect.

Body size
IGF1 C/C
HMGA2 C/T
SMAD2 G/G
LCORL G/G
STC2 A/A
ADAMTS17 A/A
Leg length
FGF4·CFA18 C/C
FGF4·CFA12 C/C
Coat
RSPO2 C/T
FGF5 T/T
KRT71 C/C
MC1R T/C
Ear set
MSRB3 A/A
Skull shape
BMP3 T/T
SMOC2 G/G
Technical details
click to expand

The numbers behind the placement. Useful for researchers reproducing the math or debugging an unexpected position; not interesting to most readers.

UMAP-3D position
x 7.166
y 11.629
z 7.944
PCA-256 distance from breed centroid
32.05
Outlier percentile in breed
38
lower = more typical
Top-3 principal components by |z|

The 3 PCs on which GRLS_grlsLZCMH0KK scores most extreme, with the 3 highest-loading SNPs on each. Foundation for the future genome-ring visualization.

PC43 z = -2.61
  • chr28:11,007,373 loading 0.0365
  • chr28:5,497,677 loading 0.0343
  • chr7:43,226,466 loading 0.0325
PC139 z = 2.39
  • chr11:59,916,847 loading 0.0380
  • chr1:13,688,590 loading -0.0336
  • chr9:44,269,754 loading 0.0311
PC167 z = 2.36
  • chr6:3,625,190 loading 0.0407
  • chr6:3,210,008 loading -0.0395
  • chr6:3,012,938 loading -0.0395
Ancestry reconstruction error: 0.61
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