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Cosmic medallion portrait of GRLS_grlsMT3GPYY, a Golden Retriever
AI portrait
About this portrait

This portrait was algorithmically built from this dog's genome: their genotype at 8 morphology loci (coat length, curl, color, ear set, body size, head shape, skull, furnishings) plus their position within the 14,478-dog atlas. The same dog always reproduces the same portrait. A different dog with different alleles gets a different portrait.

GRLS_grlsMT3GPYY

GRLS_grlsMT3GPYY is a Golden Retriever from the GRLS research cohort. One of 14,478 dogs who built the atlas.

See GRLS_grlsMT3GPYY in the atlas
About GRLS_grlsMT3GPYY

GRLS_grlsMT3GPYY sits well inside the Golden Retriever cluster - a fairly typical example.

  • Predicted medium by the six body-size genes the atlas reads (IGF1, HMGA2, SMAD2, LCORL, STC2, ADAMTS17).
  • Standard leg length. No chondrodysplasia retrogene variant.
  • Wire-coat furnishings - the eyebrow + beard variant at RSPO2.
GRLS_grlsMT3GPYY's nearest neighbors

The five dogs in the atlas whose genomes sit closest to GRLS_grlsMT3GPYY's. Click any of them to keep exploring.

  1. GRLS_grls1NG4CBXX Golden Retriever 31.48
  2. Oldies_grls60d0c7ae Golden Retriever 31.55
  3. PILOT_grlsPELEFZ77 Golden Retriever 32.03
  4. GRLS_grlsISDHJHSS Golden Retriever 32.08
  5. Oldies_grls1e84765d Golden Retriever 32.38
GRLS_grlsMT3GPYY's breed

GRLS_grlsMT3GPYY sits in the Golden Retriever cluster, with genome overlap to Labrador Retriever - sister breeds nearby in the atlas.

Breed similarity from non-negative least squares against 91 breed centroids in PCA-256 space, corrected for atlas sample-size imbalance. Without correction, Goldens (22% of the atlas) leak into every dog's raw NNLS breakdown; with it, the bias falls out. Raw fractions stay in the dataset for re-derivation. Methodology.

  1. Golden Retriever 81%
  2. Labrador Retriever 19%
Source

From the Golden Retriever Lifetime Study . Breed-page reference: Golden Retriever.

Full genotype detail
click to expand

The actual allele call at each locus's representative SNP for this dog. Each gene name links to its page where you can see the per-breed frequency table and the direction of effect.

Body size
IGF1 A/A
HMGA2 C/T
SMAD2 G/G
LCORL G/G
STC2 C/A
ADAMTS17 G/G
Leg length
FGF4·CFA18 C/C
FGF4·CFA12 C/C
Coat
RSPO2 T/T
FGF5 C/C
KRT71 C/C
MC1R C/C
Ear set
MSRB3 A/A
Skull shape
BMP3 C/T
SMOC2 A/G
Technical details
click to expand

The numbers behind the placement. Useful for researchers reproducing the math or debugging an unexpected position; not interesting to most readers.

UMAP-3D position
x 6.451
y 11.021
z 7.764
PCA-256 distance from breed centroid
30.71
Outlier percentile in breed
30
lower = more typical
Top-3 principal components by |z|

The 3 PCs on which GRLS_grlsMT3GPYY scores most extreme, with the 3 highest-loading SNPs on each. Foundation for the future genome-ring visualization.

PC203 z = 2.73
  • chr1:100,458,946 loading 0.0361
  • chr1:100,542,384 loading 0.0353
  • chr24:4,330,562 loading -0.0340
PC202 z = 2.65
  • chr7:2,141,056 loading 0.0366
  • chr14:36,686,192 loading -0.0363
  • chr14:12,756,008 loading -0.0320
PC116 z = -2.53
  • chr21:8,227,069 loading 0.0376
  • chr16:47,900,123 loading 0.0333
  • chr1:24,270,460 loading 0.0312
Ancestry reconstruction error: 0.58
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