Skip to main content
snıff
GRLS Hero · Founder
Cosmic medallion portrait of GRLS_grlsNS7M96XX, a Golden Retriever
AI portrait
About this portrait

This portrait was algorithmically built from this dog's genome: their genotype at 8 morphology loci (coat length, curl, color, ear set, body size, head shape, skull, furnishings) plus their position within the 14,478-dog atlas. The same dog always reproduces the same portrait. A different dog with different alleles gets a different portrait.

GRLS_grlsNS7M96XX

GRLS_grlsNS7M96XX is a Golden Retriever from the GRLS research cohort. One of 14,478 dogs who built the atlas.

See GRLS_grlsNS7M96XX in the atlas
About GRLS_grlsNS7M96XX

GRLS_grlsNS7M96XX sits well inside the Golden Retriever cluster - a fairly typical example.

  • Predicted large by the six body-size genes the atlas reads (IGF1, HMGA2, SMAD2, LCORL, STC2, ADAMTS17).
  • Standard leg length. No chondrodysplasia retrogene variant.
  • Carrier of the RSPO2 wire-coat variant (single copy).
GRLS_grlsNS7M96XX's nearest neighbors

The five dogs in the atlas whose genomes sit closest to GRLS_grlsNS7M96XX's. Click any of them to keep exploring.

  1. GRLS_grlsD9A0MJJJ Golden Retriever 32.39
  2. GRLS_grls1Y1K30GG Golden Retriever 32.85
  3. GRLS_grls3ABT155 Golden Retriever 33.06
  4. GRLS_grlsQNO7REWW Golden Retriever 33.50
  5. GRLS_grlsZIRB97LL Golden Retriever 34.34
GRLS_grlsNS7M96XX's breed

GRLS_grlsNS7M96XX sits in the Golden Retriever cluster, with genome overlap to Labrador Retriever - sister breeds nearby in the atlas.

Breed similarity from non-negative least squares against 91 breed centroids in PCA-256 space, corrected for atlas sample-size imbalance. Without correction, Goldens (22% of the atlas) leak into every dog's raw NNLS breakdown; with it, the bias falls out. Raw fractions stay in the dataset for re-derivation. Methodology.

  1. Golden Retriever 75%
  2. Labrador Retriever 25%
Source

From the Golden Retriever Lifetime Study . Breed-page reference: Golden Retriever.

Full genotype detail
click to expand

The actual allele call at each locus's representative SNP for this dog. Each gene name links to its page where you can see the per-breed frequency table and the direction of effect.

Body size
IGF1 A/A
HMGA2 T/T
SMAD2 G/G
LCORL G/G
STC2 A/A
ADAMTS17 G/A
Leg length
FGF4·CFA18 C/C
FGF4·CFA12 C/C
Coat
RSPO2 C/T
FGF5 T/C
KRT71 C/C
MC1R T/T
Ear set
MSRB3 A/A
Skull shape
BMP3 C/T
SMOC2 A/G
Technical details
click to expand

The numbers behind the placement. Useful for researchers reproducing the math or debugging an unexpected position; not interesting to most readers.

UMAP-3D position
x 5.923
y 10.425
z 7.774
PCA-256 distance from breed centroid
32.25
Outlier percentile in breed
39
lower = more typical
Top-3 principal components by |z|

The 3 PCs on which GRLS_grlsNS7M96XX scores most extreme, with the 3 highest-loading SNPs on each. Foundation for the future genome-ring visualization.

PC140 z = -2.49
  • chr19:4,037,398 loading 0.0415
  • chr19:5,321,387 loading 0.0400
  • chr19:5,388,895 loading -0.0395
PC187 z = 2.48
  • chr20:38,870,936 loading 0.0437
  • chr20:38,628,243 loading -0.0415
  • chr14:6,119,398 loading -0.0403
PC207 z = -2.39
  • chr13:666,991 loading 0.0347
  • chr25:4,215,319 loading -0.0336
  • chr18:33,604,976 loading 0.0307
Ancestry reconstruction error: 0.58
Back to the Atlas →