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Cosmic medallion portrait of GRLS_grlsP4R4TKTT, a Golden Retriever
AI portrait
About this portrait

This portrait was algorithmically built from this dog's genome: their genotype at 8 morphology loci (coat length, curl, color, ear set, body size, head shape, skull, furnishings) plus their position within the 14,478-dog atlas. The same dog always reproduces the same portrait. A different dog with different alleles gets a different portrait.

GRLS_grlsP4R4TKTT

GRLS_grlsP4R4TKTT is a Golden Retriever from the GRLS research cohort. One of 14,478 dogs who built the atlas.

See GRLS_grlsP4R4TKTT in the atlas
About GRLS_grlsP4R4TKTT

GRLS_grlsP4R4TKTT sits well inside the Golden Retriever cluster - a fairly typical example.

  • Predicted giant by the six body-size genes the atlas reads (IGF1, HMGA2, SMAD2, LCORL, STC2, ADAMTS17).
  • Standard leg length. No chondrodysplasia retrogene variant.
  • Smooth coat. No wire-furnishings variant at RSPO2.
GRLS_grlsP4R4TKTT's nearest neighbors

The five dogs in the atlas whose genomes sit closest to GRLS_grlsP4R4TKTT's. Click any of them to keep exploring.

  1. GRLS_grls8T8GJ1HH Golden Retriever 31.57
  2. GRLS_grls1G0BXJAA Golden Retriever 31.62
  3. GRLS_grlsOMR9B833 Golden Retriever 32.15
  4. GRLS_grlsIWSP2HWW Golden Retriever 32.45
  5. GRLS_grlsMSQR2KGG Golden Retriever 32.47
GRLS_grlsP4R4TKTT's breed

GRLS_grlsP4R4TKTT sits in the Golden Retriever cluster, with genome overlap to Labrador Retriever - sister breeds nearby in the atlas.

Breed similarity from non-negative least squares against 91 breed centroids in PCA-256 space, corrected for atlas sample-size imbalance. Without correction, Goldens (22% of the atlas) leak into every dog's raw NNLS breakdown; with it, the bias falls out. Raw fractions stay in the dataset for re-derivation. Methodology.

  1. Golden Retriever 81%
  2. Labrador Retriever 19%
Source

From the Golden Retriever Lifetime Study . Breed-page reference: Golden Retriever.

Full genotype detail
click to expand

The actual allele call at each locus's representative SNP for this dog. Each gene name links to its page where you can see the per-breed frequency table and the direction of effect.

Body size
IGF1 C/C
HMGA2 C/C
SMAD2 G/G
LCORL G/G
STC2 C/A
ADAMTS17 A/A
Leg length
FGF4·CFA18 C/C
FGF4·CFA12 C/C
Coat
RSPO2 C/C
FGF5 C/C
KRT71 C/C
MC1R T/C
Ear set
MSRB3 A/A
Skull shape
BMP3 C/C
SMOC2 G/G
Technical details
click to expand

The numbers behind the placement. Useful for researchers reproducing the math or debugging an unexpected position; not interesting to most readers.

UMAP-3D position
x 8.691
y 10.333
z 8.849
PCA-256 distance from breed centroid
29.94
Outlier percentile in breed
26
lower = more typical
Top-3 principal components by |z|

The 3 PCs on which GRLS_grlsP4R4TKTT scores most extreme, with the 3 highest-loading SNPs on each. Foundation for the future genome-ring visualization.

PC160 z = 2.50
  • chr26:4,196,092 loading 0.0325
  • chr1:1,402,180 loading -0.0321
  • chr17:2,046,668 loading -0.0309
PC232 z = 2.38
  • chr8:13,394,852 loading 0.0320
  • chr30:2,998,314 loading 0.0313
  • chr12:26,709,882 loading 0.0290
PC136 z = 2.10
  • chr13:1,840,654 loading 0.0379
  • chr19:3,379,845 loading -0.0360
  • chr26:3,121,537 loading -0.0358
Ancestry reconstruction error: 0.51
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