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Cosmic medallion portrait of GRLS_grlsQ69TSEMM, a Golden Retriever
AI portrait
About this portrait

This portrait was algorithmically built from this dog's genome: their genotype at 8 morphology loci (coat length, curl, color, ear set, body size, head shape, skull, furnishings) plus their position within the 14,478-dog atlas. The same dog always reproduces the same portrait. A different dog with different alleles gets a different portrait.

GRLS_grlsQ69TSEMM

GRLS_grlsQ69TSEMM is a Golden Retriever from the GRLS research cohort. One of 14,478 dogs who built the atlas.

See GRLS_grlsQ69TSEMM in the atlas
About GRLS_grlsQ69TSEMM

GRLS_grlsQ69TSEMM sits near the center of the Golden Retriever cluster - genetically very typical for the breed.

  • Predicted large by the six body-size genes the atlas reads (IGF1, HMGA2, SMAD2, LCORL, STC2, ADAMTS17).
  • Standard leg length. No chondrodysplasia retrogene variant.
  • Wire-coat furnishings - the eyebrow + beard variant at RSPO2.
GRLS_grlsQ69TSEMM's nearest neighbors

The five dogs in the atlas whose genomes sit closest to GRLS_grlsQ69TSEMM's. Click any of them to keep exploring.

  1. GRLS_grls1GKEB022 Golden Retriever 28.00
  2. GRLS_grlsX03TLECC Golden Retriever 28.11
  3. GRLS_grlsOMPOVPZZ Golden Retriever 28.12
  4. GRLS_grlsLIS29PP Golden Retriever 28.32
  5. GRLS_grls8W1UIJYY Golden Retriever 28.39
GRLS_grlsQ69TSEMM's breed

GRLS_grlsQ69TSEMM sits in the Golden Retriever cluster, with genome overlap to Labrador Retriever - sister breeds nearby in the atlas.

Breed similarity from non-negative least squares against 91 breed centroids in PCA-256 space, corrected for atlas sample-size imbalance. Without correction, Goldens (22% of the atlas) leak into every dog's raw NNLS breakdown; with it, the bias falls out. Raw fractions stay in the dataset for re-derivation. Methodology.

  1. Golden Retriever 79%
  2. Labrador Retriever 21%
Source

From the Golden Retriever Lifetime Study . Breed-page reference: Golden Retriever.

Full genotype detail
click to expand

The actual allele call at each locus's representative SNP for this dog. Each gene name links to its page where you can see the per-breed frequency table and the direction of effect.

Body size
IGF1 C/A
HMGA2 T/T
SMAD2 G/G
LCORL G/G
STC2 A/A
ADAMTS17 G/G
Leg length
FGF4·CFA18 C/C
FGF4·CFA12 C/C
Coat
RSPO2 T/T
FGF5 T/C
KRT71 C/C
MC1R C/C
Ear set
MSRB3 A/A
Skull shape
BMP3 C/T
SMOC2 A/G
Technical details
click to expand

The numbers behind the placement. Useful for researchers reproducing the math or debugging an unexpected position; not interesting to most readers.

UMAP-3D position
x 8.286
y 10.833
z 6.439
PCA-256 distance from breed centroid
29.41
Outlier percentile in breed
22
lower = more typical
Top-3 principal components by |z|

The 3 PCs on which GRLS_grlsQ69TSEMM scores most extreme, with the 3 highest-loading SNPs on each. Foundation for the future genome-ring visualization.

PC185 z = 2.59
  • chr7:42,518,817 loading 0.0342
  • chr11:2,541,241 loading 0.0331
  • chr27:42,849,032 loading -0.0324
PC13 z = -2.41
  • chr11:38,528,765 loading 0.0255
  • chr18:48,123,615 loading 0.0255
  • chr15:30,849,502 loading 0.0253
PC100 z = 2.17
  • chr20:38,870,936 loading 0.0397
  • chr34:1,972,619 loading -0.0360
  • chr34:1,533,247 loading -0.0331
Ancestry reconstruction error: 0.55
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