Skip to main content
snıff
GRLS Hero · Founder
Cosmic medallion portrait of GRLS_grlsSP9PKNFF, a Golden Retriever
AI portrait
About this portrait

This portrait was algorithmically built from this dog's genome: their genotype at 8 morphology loci (coat length, curl, color, ear set, body size, head shape, skull, furnishings) plus their position within the 14,478-dog atlas. The same dog always reproduces the same portrait. A different dog with different alleles gets a different portrait.

GRLS_grlsSP9PKNFF

GRLS_grlsSP9PKNFF is a Golden Retriever from the GRLS research cohort. One of 14,478 dogs who built the atlas.

See GRLS_grlsSP9PKNFF in the atlas
About GRLS_grlsSP9PKNFF

GRLS_grlsSP9PKNFF sits well inside the Golden Retriever cluster - a fairly typical example.

  • Predicted large by the six body-size genes the atlas reads (IGF1, HMGA2, SMAD2, LCORL, STC2, ADAMTS17).
  • Standard leg length. No chondrodysplasia retrogene variant.
  • Smooth coat. No wire-furnishings variant at RSPO2.
GRLS_grlsSP9PKNFF's nearest neighbors

The five dogs in the atlas whose genomes sit closest to GRLS_grlsSP9PKNFF's. Click any of them to keep exploring.

  1. GRLS_grlsQ1S4CRTT Golden Retriever 24.18
  2. GRLS_grls0XFD2S00 Golden Retriever 32.85
  3. GRLS_grls3TP3YZQQ Golden Retriever 33.16
  4. GRLS_grlsWTUWRVLL Golden Retriever 33.46
  5. GRLS_grls40UEVBZZ Golden Retriever 33.74
GRLS_grlsSP9PKNFF's breed

GRLS_grlsSP9PKNFF sits in the Golden Retriever cluster, with genome overlap to Labrador Retriever - sister breeds nearby in the atlas.

Breed similarity from non-negative least squares against 91 breed centroids in PCA-256 space, corrected for atlas sample-size imbalance. Without correction, Goldens (22% of the atlas) leak into every dog's raw NNLS breakdown; with it, the bias falls out. Raw fractions stay in the dataset for re-derivation. Methodology.

  1. Golden Retriever 78%
  2. Labrador Retriever 23%
Source

From the Golden Retriever Lifetime Study . Breed-page reference: Golden Retriever.

Full genotype detail
click to expand

The actual allele call at each locus's representative SNP for this dog. Each gene name links to its page where you can see the per-breed frequency table and the direction of effect.

Body size
IGF1 C/C
HMGA2 T/T
SMAD2 G/G
LCORL G/G
STC2 A/A
ADAMTS17 G/G
Leg length
FGF4·CFA18 C/C
FGF4·CFA12 C/C
Coat
RSPO2 C/C
FGF5 C/C
KRT71 C/C
MC1R T/C
Ear set
MSRB3 A/A
Skull shape
BMP3 C/C
SMOC2 A/G
Technical details
click to expand

The numbers behind the placement. Useful for researchers reproducing the math or debugging an unexpected position; not interesting to most readers.

UMAP-3D position
x 8.012
y 10.853
z 7.391
PCA-256 distance from breed centroid
29.95
Outlier percentile in breed
26
lower = more typical
Top-3 principal components by |z|

The 3 PCs on which GRLS_grlsSP9PKNFF scores most extreme, with the 3 highest-loading SNPs on each. Foundation for the future genome-ring visualization.

PC201 z = 3.11
  • chr28:5,497,677 loading 0.0416
  • chr28:5,428,661 loading 0.0337
  • chr20:7,134,018 loading 0.0323
PC173 z = -2.73
  • chr17:4,173,842 loading 0.0406
  • chr17:4,233,511 loading 0.0400
  • chr17:4,353,120 loading 0.0343
PC154 z = 2.69
  • chr34:1,972,619 loading 0.0431
  • chr34:1,533,247 loading 0.0397
  • chr34:2,125,452 loading 0.0365
Ancestry reconstruction error: 0.55
Back to the Atlas →