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Cosmic medallion portrait of GRLS_grlsSXRBB9KK, a Golden Retriever
AI portrait
About this portrait

This portrait was algorithmically built from this dog's genome: their genotype at 8 morphology loci (coat length, curl, color, ear set, body size, head shape, skull, furnishings) plus their position within the 14,478-dog atlas. The same dog always reproduces the same portrait. A different dog with different alleles gets a different portrait.

GRLS_grlsSXRBB9KK

GRLS_grlsSXRBB9KK is a Golden Retriever from the GRLS research cohort. One of 14,478 dogs who built the atlas.

See GRLS_grlsSXRBB9KK in the atlas
About GRLS_grlsSXRBB9KK

GRLS_grlsSXRBB9KK sits well inside the Golden Retriever cluster - a fairly typical example.

  • Predicted large by the six body-size genes the atlas reads (IGF1, HMGA2, SMAD2, LCORL, STC2, ADAMTS17).
  • Standard leg length. No chondrodysplasia retrogene variant.
  • Wire-coat furnishings - the eyebrow + beard variant at RSPO2.
GRLS_grlsSXRBB9KK's nearest neighbors

The five dogs in the atlas whose genomes sit closest to GRLS_grlsSXRBB9KK's. Click any of them to keep exploring.

  1. GRLS_grls81HF1RZZ Golden Retriever 26.83
  2. GRLS_grlsJRUZH4TT Golden Retriever 27.52
  3. GRLS_grlsCQ626MAA Golden Retriever 29.49
  4. GRLS_grls9NZ8HLWW Golden Retriever 29.69
  5. GRLS_grlsNJN1N711 Golden Retriever 29.75
GRLS_grlsSXRBB9KK's breed

GRLS_grlsSXRBB9KK sits in the Golden Retriever cluster, with genome overlap to Labrador Retriever - sister breeds nearby in the atlas.

Breed similarity from non-negative least squares against 91 breed centroids in PCA-256 space, corrected for atlas sample-size imbalance. Without correction, Goldens (22% of the atlas) leak into every dog's raw NNLS breakdown; with it, the bias falls out. Raw fractions stay in the dataset for re-derivation. Methodology.

  1. Golden Retriever 75%
  2. Labrador Retriever 25%
Source

From the Golden Retriever Lifetime Study . Breed-page reference: Golden Retriever.

Full genotype detail
click to expand

The actual allele call at each locus's representative SNP for this dog. Each gene name links to its page where you can see the per-breed frequency table and the direction of effect.

Body size
IGF1 C/A
HMGA2 T/T
SMAD2 G/G
LCORL G/G
STC2 A/A
ADAMTS17 G/G
Leg length
FGF4·CFA18 C/C
FGF4·CFA12 C/C
Coat
RSPO2 T/T
FGF5 C/C
KRT71 C/C
MC1R T/T
Ear set
MSRB3 A/A
Skull shape
BMP3 C/T
SMOC2 G/G
Technical details
click to expand

The numbers behind the placement. Useful for researchers reproducing the math or debugging an unexpected position; not interesting to most readers.

UMAP-3D position
x 8.018
y 10.733
z 8.677
PCA-256 distance from breed centroid
30.04
Outlier percentile in breed
26
lower = more typical
Top-3 principal components by |z|

The 3 PCs on which GRLS_grlsSXRBB9KK scores most extreme, with the 3 highest-loading SNPs on each. Foundation for the future genome-ring visualization.

PC180 z = -3.51
  • chr25:3,195,036 loading 0.0485
  • chr25:4,418,784 loading -0.0459
  • chr25:3,349,555 loading 0.0401
PC137 z = 2.74
  • chr22:28,989,668 loading 0.0410
  • chr22:28,783,539 loading -0.0357
  • chr19:1,162,032 loading 0.0337
PC148 z = -2.54
  • chr6:30,769,727 loading 0.0436
  • chr1:62,992,483 loading -0.0356
  • chr6:30,876,588 loading -0.0355
Ancestry reconstruction error: 0.54
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