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Cosmic medallion portrait of GRLS_grlsT13LR5ZZ, a Golden Retriever
AI portrait
About this portrait

This portrait was algorithmically built from this dog's genome: their genotype at 8 morphology loci (coat length, curl, color, ear set, body size, head shape, skull, furnishings) plus their position within the 14,478-dog atlas. The same dog always reproduces the same portrait. A different dog with different alleles gets a different portrait.

GRLS_grlsT13LR5ZZ

GRLS_grlsT13LR5ZZ is a Golden Retriever from the GRLS research cohort. One of 14,478 dogs who built the atlas.

See GRLS_grlsT13LR5ZZ in the atlas
About GRLS_grlsT13LR5ZZ

GRLS_grlsT13LR5ZZ is a notable Golden Retriever - distinctive within the breed.

  • Predicted large by the six body-size genes the atlas reads (IGF1, HMGA2, SMAD2, LCORL, STC2, ADAMTS17).
  • Standard leg length. No chondrodysplasia retrogene variant.
  • Smooth coat. No wire-furnishings variant at RSPO2.
GRLS_grlsT13LR5ZZ's nearest neighbors

The five dogs in the atlas whose genomes sit closest to GRLS_grlsT13LR5ZZ's. Click any of them to keep exploring.

  1. GRLS_grlsALZ9WRII Golden Retriever 22.68
  2. GRLS_grlsPTVU6SSS Golden Retriever 23.91
  3. GRLS_grlsJZ2T2EKK Golden Retriever 35.09
  4. GRLS_grlsVKGKR300 Golden Retriever 36.96
  5. GRLS_grls9RUTVFMM Golden Retriever 37.57
GRLS_grlsT13LR5ZZ's breed

GRLS_grlsT13LR5ZZ sits in the Golden Retriever cluster, with genome overlap to Labrador Retriever - sister breeds nearby in the atlas.

Breed similarity from non-negative least squares against 91 breed centroids in PCA-256 space, corrected for atlas sample-size imbalance. Without correction, Goldens (22% of the atlas) leak into every dog's raw NNLS breakdown; with it, the bias falls out. Raw fractions stay in the dataset for re-derivation. Methodology.

  1. Golden Retriever 78%
  2. Labrador Retriever 22%
Source

From the Golden Retriever Lifetime Study . Breed-page reference: Golden Retriever.

Full genotype detail
click to expand

The actual allele call at each locus's representative SNP for this dog. Each gene name links to its page where you can see the per-breed frequency table and the direction of effect.

Body size
IGF1 A/A
HMGA2 T/T
SMAD2 G/G
LCORL G/G
STC2 A/A
ADAMTS17 G/A
Leg length
FGF4·CFA18 C/C
FGF4·CFA12 C/C
Coat
RSPO2 C/C
FGF5 C/C
KRT71 C/C
MC1R T/T
Ear set
MSRB3 A/A
Skull shape
BMP3 C/C
SMOC2 G/G
Technical details
click to expand

The numbers behind the placement. Useful for researchers reproducing the math or debugging an unexpected position; not interesting to most readers.

UMAP-3D position
x 9.237
y 10.007
z 9.227
PCA-256 distance from breed centroid
39.73
Outlier percentile in breed
75
lower = more typical
Top-3 principal components by |z|

The 3 PCs on which GRLS_grlsT13LR5ZZ scores most extreme, with the 3 highest-loading SNPs on each. Foundation for the future genome-ring visualization.

PC144 z = -3.43
  • chr17:4,173,842 loading 0.0340
  • chr34:2,125,452 loading 0.0333
  • chr17:4,128,965 loading 0.0327
PC53 z = -3.42
  • chr1:72,254,803 loading 0.0346
  • chr1:70,825,780 loading 0.0344
  • chr14:9,177,180 loading 0.0335
PC197 z = 3.31
  • chr7:40,629,884 loading 0.0367
  • chr7:40,535,333 loading 0.0324
  • chr18:50,696,547 loading 0.0323
Ancestry reconstruction error: 0.60
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