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Cosmic medallion portrait of GRLS_grlsWLGLJ5HH, a Golden Retriever
AI portrait
About this portrait

This portrait was algorithmically built from this dog's genome: their genotype at 8 morphology loci (coat length, curl, color, ear set, body size, head shape, skull, furnishings) plus their position within the 14,478-dog atlas. The same dog always reproduces the same portrait. A different dog with different alleles gets a different portrait.

GRLS_grlsWLGLJ5HH

GRLS_grlsWLGLJ5HH is a Golden Retriever from the GRLS research cohort. One of 14,478 dogs who built the atlas.

See GRLS_grlsWLGLJ5HH in the atlas
About GRLS_grlsWLGLJ5HH

GRLS_grlsWLGLJ5HH sits near the center of the Golden Retriever cluster - genetically very typical for the breed.

  • Predicted large by the six body-size genes the atlas reads (IGF1, HMGA2, SMAD2, LCORL, STC2, ADAMTS17).
  • Standard leg length. No chondrodysplasia retrogene variant.
  • Smooth coat. No wire-furnishings variant at RSPO2.
GRLS_grlsWLGLJ5HH's nearest neighbors

The five dogs in the atlas whose genomes sit closest to GRLS_grlsWLGLJ5HH's. Click any of them to keep exploring.

  1. Oldies_grlse576e4ee Golden Retriever 31.07
  2. GRLS_grlsBLVCX2EE Golden Retriever 31.09
  3. GRLS_grls4Q3HPJJJ Golden Retriever 31.46
  4. GRLS_grls9EM622 Golden Retriever 32.02
  5. PFZ32G07_PFZ32G07 Golden Retriever 32.09
GRLS_grlsWLGLJ5HH's breed

GRLS_grlsWLGLJ5HH sits in the Golden Retriever cluster, with genome overlap to Labrador Retriever - sister breeds nearby in the atlas.

Breed similarity from non-negative least squares against 91 breed centroids in PCA-256 space, corrected for atlas sample-size imbalance. Without correction, Goldens (22% of the atlas) leak into every dog's raw NNLS breakdown; with it, the bias falls out. Raw fractions stay in the dataset for re-derivation. Methodology.

  1. Golden Retriever 85%
  2. Labrador Retriever 16%
Source

From the Golden Retriever Lifetime Study . Breed-page reference: Golden Retriever.

Full genotype detail
click to expand

The actual allele call at each locus's representative SNP for this dog. Each gene name links to its page where you can see the per-breed frequency table and the direction of effect.

Body size
IGF1 C/A
HMGA2 T/T
SMAD2 G/G
LCORL G/G
STC2 A/A
ADAMTS17 G/G
Leg length
FGF4·CFA18 C/C
FGF4·CFA12 C/C
Coat
RSPO2 C/C
FGF5 T/C
KRT71 C/C
MC1R T/C
Ear set
MSRB3 A/A
Skull shape
BMP3 C/T
SMOC2 G/G
Technical details
click to expand

The numbers behind the placement. Useful for researchers reproducing the math or debugging an unexpected position; not interesting to most readers.

UMAP-3D position
x 7.581
y 10.749
z 7.971
PCA-256 distance from breed centroid
29.56
Outlier percentile in breed
23
lower = more typical
Top-3 principal components by |z|

The 3 PCs on which GRLS_grlsWLGLJ5HH scores most extreme, with the 3 highest-loading SNPs on each. Foundation for the future genome-ring visualization.

PC251 z = 2.92
  • chr25:40,121,397 loading 0.0326
  • chr28:17,013,099 loading 0.0310
  • chr26:15,170,564 loading 0.0302
PC156 z = 2.89
  • chr24:4,330,562 loading 0.0395
  • chr1:76,396,561 loading -0.0378
  • chr24:4,851,124 loading -0.0357
PC206 z = -2.48
  • chr7:42,935,741 loading 0.0386
  • chr19:34,609,563 loading -0.0356
  • chr30:22,656,587 loading 0.0321
Ancestry reconstruction error: 0.57
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