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Cosmic medallion portrait of GRLS_grlsZJU5H900, a Golden Retriever
AI portrait
About this portrait

This portrait was algorithmically built from this dog's genome: their genotype at 8 morphology loci (coat length, curl, color, ear set, body size, head shape, skull, furnishings) plus their position within the 14,478-dog atlas. The same dog always reproduces the same portrait. A different dog with different alleles gets a different portrait.

GRLS_grlsZJU5H900

GRLS_grlsZJU5H900 is a Golden Retriever from the GRLS research cohort. One of 14,478 dogs who built the atlas.

See GRLS_grlsZJU5H900 in the atlas
About GRLS_grlsZJU5H900

GRLS_grlsZJU5H900 sits near the center of the Golden Retriever cluster - genetically very typical for the breed.

  • Predicted medium by the six body-size genes the atlas reads (IGF1, HMGA2, SMAD2, LCORL, STC2, ADAMTS17).
  • Standard leg length. No chondrodysplasia retrogene variant.
  • Smooth coat. No wire-furnishings variant at RSPO2.
GRLS_grlsZJU5H900's nearest neighbors

The five dogs in the atlas whose genomes sit closest to GRLS_grlsZJU5H900's. Click any of them to keep exploring.

  1. GRLS_grlsLFOHPMNN Golden Retriever 25.64
  2. GRLS_grlsMNTW6TNN Golden Retriever 27.78
  3. GRLS_grls5XHD544 Golden Retriever 27.93
  4. GRLS_grlsEU20O6AA Golden Retriever 27.94
  5. PILOT_grls871HJUOO Golden Retriever 28.29
GRLS_grlsZJU5H900's breed

GRLS_grlsZJU5H900 sits in the Golden Retriever cluster, with genome overlap to Labrador Retriever - sister breeds nearby in the atlas.

Breed similarity from non-negative least squares against 91 breed centroids in PCA-256 space, corrected for atlas sample-size imbalance. Without correction, Goldens (22% of the atlas) leak into every dog's raw NNLS breakdown; with it, the bias falls out. Raw fractions stay in the dataset for re-derivation. Methodology.

  1. Golden Retriever 78%
  2. Labrador Retriever 22%
Source

From the Golden Retriever Lifetime Study . Breed-page reference: Golden Retriever.

Full genotype detail
click to expand

The actual allele call at each locus's representative SNP for this dog. Each gene name links to its page where you can see the per-breed frequency table and the direction of effect.

Body size
IGF1 A/A
HMGA2 T/T
SMAD2 A/G
LCORL G/G
STC2 A/A
ADAMTS17 G/A
Leg length
FGF4·CFA18 C/C
FGF4·CFA12 C/C
Coat
RSPO2 C/C
FGF5 C/C
KRT71 C/C
MC1R T/C
Ear set
MSRB3 A/A
Skull shape
BMP3 C/T
SMOC2 G/G
Technical details
click to expand

The numbers behind the placement. Useful for researchers reproducing the math or debugging an unexpected position; not interesting to most readers.

UMAP-3D position
x 7.452
y 10.746
z 7.901
PCA-256 distance from breed centroid
24.33
Outlier percentile in breed
1
lower = more typical
Top-3 principal components by |z|

The 3 PCs on which GRLS_grlsZJU5H900 scores most extreme, with the 3 highest-loading SNPs on each. Foundation for the future genome-ring visualization.

PC252 z = 2.22
  • chr19:30,132,204 loading 0.0320
  • chr25:21,796,415 loading -0.0316
  • chr3:5,565,848 loading 0.0303
PC158 z = -2.14
  • chr1:69,893,718 loading 0.0314
  • chr1:64,453,595 loading -0.0313
  • chr8:29,102,271 loading -0.0309
PC251 z = -2.12
  • chr25:40,121,397 loading 0.0326
  • chr28:17,013,099 loading 0.0310
  • chr26:15,170,564 loading 0.0302
Ancestry reconstruction error: 0.48
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