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Cosmic medallion portrait of GRLS_grlsZY1Z1OSS, a Golden Retriever
AI portrait
About this portrait

This portrait was algorithmically built from this dog's genome: their genotype at 8 morphology loci (coat length, curl, color, ear set, body size, head shape, skull, furnishings) plus their position within the 14,478-dog atlas. The same dog always reproduces the same portrait. A different dog with different alleles gets a different portrait.

GRLS_grlsZY1Z1OSS

GRLS_grlsZY1Z1OSS is a Golden Retriever from the GRLS research cohort. One of 14,478 dogs who built the atlas.

See GRLS_grlsZY1Z1OSS in the atlas
About GRLS_grlsZY1Z1OSS

GRLS_grlsZY1Z1OSS sits near the center of the Golden Retriever cluster - genetically very typical for the breed.

  • Predicted large by the six body-size genes the atlas reads (IGF1, HMGA2, SMAD2, LCORL, STC2, ADAMTS17).
  • Standard leg length. No chondrodysplasia retrogene variant.
  • Smooth coat. No wire-furnishings variant at RSPO2.
GRLS_grlsZY1Z1OSS's nearest neighbors

The five dogs in the atlas whose genomes sit closest to GRLS_grlsZY1Z1OSS's. Click any of them to keep exploring.

  1. PILOT_grls2XGEZCC Golden Retriever 29.07
  2. GRLS_grlsMMKSTLL Golden Retriever 29.36
  3. PFZ43A11_PFZ43A11 Golden Retriever 29.78
  4. GRLS_grls7PGZ1RNN Golden Retriever 29.91
  5. PILOT_grlsE3HO8RII Golden Retriever 30.13
GRLS_grlsZY1Z1OSS's breed

GRLS_grlsZY1Z1OSS sits in the Golden Retriever cluster, with genome overlap to Labrador Retriever - sister breeds nearby in the atlas.

Breed similarity from non-negative least squares against 91 breed centroids in PCA-256 space, corrected for atlas sample-size imbalance. Without correction, Goldens (22% of the atlas) leak into every dog's raw NNLS breakdown; with it, the bias falls out. Raw fractions stay in the dataset for re-derivation. Methodology.

  1. Golden Retriever 80%
  2. Labrador Retriever 20%
Source

From the Golden Retriever Lifetime Study . Breed-page reference: Golden Retriever.

Full genotype detail
click to expand

The actual allele call at each locus's representative SNP for this dog. Each gene name links to its page where you can see the per-breed frequency table and the direction of effect.

Body size
IGF1 C/C
HMGA2 T/T
SMAD2 A/G
LCORL G/G
STC2 A/A
ADAMTS17 G/G
Leg length
FGF4·CFA18 C/C
FGF4·CFA12 C/C
Coat
RSPO2 C/C
FGF5 C/C
KRT71 C/C
MC1R T/C
Ear set
MSRB3 A/A
Skull shape
BMP3 C/T
SMOC2 G/G
Technical details
click to expand

The numbers behind the placement. Useful for researchers reproducing the math or debugging an unexpected position; not interesting to most readers.

UMAP-3D position
x 7.699
y 10.974
z 7.811
PCA-256 distance from breed centroid
26.00
Outlier percentile in breed
4
lower = more typical
Top-3 principal components by |z|

The 3 PCs on which GRLS_grlsZY1Z1OSS scores most extreme, with the 3 highest-loading SNPs on each. Foundation for the future genome-ring visualization.

PC187 z = -2.83
  • chr20:38,870,936 loading 0.0437
  • chr20:38,628,243 loading -0.0415
  • chr14:6,119,398 loading -0.0403
PC176 z = -2.67
  • chr13:1,243,516 loading 0.0372
  • chr13:4,612,002 loading -0.0358
  • chr13:2,021,999 loading -0.0342
PC171 z = -2.38
  • chr1:99,975,270 loading 0.0421
  • chr1:99,774,502 loading 0.0419
  • chr1:99,902,496 loading 0.0354
Ancestry reconstruction error: 0.51
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