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GRLS Hero Oldie · Founder
Cosmic medallion portrait of Oldies_grls120cfbe1, a Golden Retriever
AI portrait
About this portrait

This portrait was algorithmically built from this dog's genome: their genotype at 8 morphology loci (coat length, curl, color, ear set, body size, head shape, skull, furnishings) plus their position within the 14,478-dog atlas. The same dog always reproduces the same portrait. A different dog with different alleles gets a different portrait.

Oldies_grls120cfbe1

Oldies_grls120cfbe1 is a Golden Retriever from the GRLS research cohort. One of 14,478 dogs who built the atlas.

See Oldies_grls120cfbe1 in the atlas
About Oldies_grls120cfbe1

Oldies_grls120cfbe1 sits at the edge of the Golden Retriever cluster but still well within it.

  • Predicted medium by the six body-size genes the atlas reads (IGF1, HMGA2, SMAD2, LCORL, STC2, ADAMTS17).
  • Standard leg length. No chondrodysplasia retrogene variant.
  • Carrier of the RSPO2 wire-coat variant (single copy).
Oldies_grls120cfbe1's nearest neighbors

The five dogs in the atlas whose genomes sit closest to Oldies_grls120cfbe1's. Click any of them to keep exploring.

  1. GRLS_grlsS6JNNKVV Golden Retriever 33.25
  2. GRLS_grlsSE979DGG Golden Retriever 33.94
  3. Oldies_grls9493adbc Golden Retriever 34.04
  4. PILOT_grls0762M2FF Golden Retriever 34.41
  5. GRLS_grlsKJDUC6TT Golden Retriever 35.26
Oldies_grls120cfbe1's breed

Oldies_grls120cfbe1 sits in the Golden Retriever cluster, with genome overlap to Labrador Retriever - sister breeds nearby in the atlas.

Breed similarity from non-negative least squares against 91 breed centroids in PCA-256 space, corrected for atlas sample-size imbalance. Without correction, Goldens (22% of the atlas) leak into every dog's raw NNLS breakdown; with it, the bias falls out. Raw fractions stay in the dataset for re-derivation. Methodology.

  1. Golden Retriever 82%
  2. Labrador Retriever 19%
Source

From the Golden Retriever Lifetime Study . Breed-page reference: Golden Retriever.

Full genotype detail
click to expand

The actual allele call at each locus's representative SNP for this dog. Each gene name links to its page where you can see the per-breed frequency table and the direction of effect.

Body size
IGF1 C/A
HMGA2 C/T
SMAD2 G/G
LCORL G/G
STC2 A/A
ADAMTS17 G/G
Leg length
FGF4·CFA18 C/C
FGF4·CFA12 C/C
Coat
RSPO2 C/T
FGF5 C/C
KRT71 C/C
MC1R T/T
Ear set
MSRB3 A/A
Skull shape
BMP3 C/C
SMOC2 G/G
Technical details
click to expand

The numbers behind the placement. Useful for researchers reproducing the math or debugging an unexpected position; not interesting to most readers.

UMAP-3D position
x 8.390
y 9.223
z 7.655
PCA-256 distance from breed centroid
38.77
Outlier percentile in breed
71
lower = more typical
Top-3 principal components by |z|

The 3 PCs on which Oldies_grls120cfbe1 scores most extreme, with the 3 highest-loading SNPs on each. Foundation for the future genome-ring visualization.

PC87 z = -3.25
  • chr18:17,740,291 loading 0.0425
  • chr18:13,022,424 loading -0.0364
  • chr18:14,917,450 loading -0.0361
PC53 z = 2.91
  • chr1:72,254,803 loading 0.0346
  • chr1:70,825,780 loading 0.0344
  • chr14:9,177,180 loading 0.0335
PC125 z = 2.60
  • chr26:7,428,484 loading 0.0355
  • chr21:3,789,149 loading 0.0351
  • chr4:1,268,630 loading 0.0319
Ancestry reconstruction error: 0.61
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