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GRLS Hero Oldie · Founder
Cosmic medallion portrait of Oldies_grls2e1693f3, a Golden Retriever
AI portrait
About this portrait

This portrait was algorithmically built from this dog's genome: their genotype at 8 morphology loci (coat length, curl, color, ear set, body size, head shape, skull, furnishings) plus their position within the 14,478-dog atlas. The same dog always reproduces the same portrait. A different dog with different alleles gets a different portrait.

Oldies_grls2e1693f3

Oldies_grls2e1693f3 is a Golden Retriever from the GRLS research cohort. One of 14,478 dogs who built the atlas.

See Oldies_grls2e1693f3 in the atlas
About Oldies_grls2e1693f3

Oldies_grls2e1693f3 sits near the center of the Golden Retriever cluster - genetically very typical for the breed.

  • Predicted large by the six body-size genes the atlas reads (IGF1, HMGA2, SMAD2, LCORL, STC2, ADAMTS17).
  • Standard leg length. No chondrodysplasia retrogene variant.
  • Wire-coat furnishings - the eyebrow + beard variant at RSPO2.
Oldies_grls2e1693f3's nearest neighbors

The five dogs in the atlas whose genomes sit closest to Oldies_grls2e1693f3's. Click any of them to keep exploring.

  1. PILOT_grls4IH8IF22 Golden Retriever 28.19
  2. GRLS_grlsT20MZ3OO Golden Retriever 29.98
  3. GRLS_grls5TTBTYY Golden Retriever 30.21
  4. Oldies_grls48d7d5dd Golden Retriever 30.26
  5. GRLS_grls5JZQZUOO Golden Retriever 30.33
Oldies_grls2e1693f3's breed

Oldies_grls2e1693f3 sits in the Golden Retriever cluster, with genome overlap to Labrador Retriever - sister breeds nearby in the atlas.

Breed similarity from non-negative least squares against 91 breed centroids in PCA-256 space, corrected for atlas sample-size imbalance. Without correction, Goldens (22% of the atlas) leak into every dog's raw NNLS breakdown; with it, the bias falls out. Raw fractions stay in the dataset for re-derivation. Methodology.

  1. Golden Retriever 76%
  2. Labrador Retriever 24%
Source

From the Golden Retriever Lifetime Study . Breed-page reference: Golden Retriever.

Full genotype detail
click to expand

The actual allele call at each locus's representative SNP for this dog. Each gene name links to its page where you can see the per-breed frequency table and the direction of effect.

Body size
IGF1 C/A
HMGA2 T/T
SMAD2 G/G
LCORL G/G
STC2 A/A
ADAMTS17 G/A
Leg length
FGF4·CFA18 C/C
FGF4·CFA12 C/C
Coat
RSPO2 T/T
FGF5 C/C
KRT71 C/C
MC1R C/C
Ear set
MSRB3 A/A
Skull shape
BMP3 C/T
SMOC2 G/G
Technical details
click to expand

The numbers behind the placement. Useful for researchers reproducing the math or debugging an unexpected position; not interesting to most readers.

UMAP-3D position
x 7.174
y 11.199
z 7.695
PCA-256 distance from breed centroid
28.80
Outlier percentile in breed
19
lower = more typical
Top-3 principal components by |z|

The 3 PCs on which Oldies_grls2e1693f3 scores most extreme, with the 3 highest-loading SNPs on each. Foundation for the future genome-ring visualization.

PC252 z = -2.58
  • chr19:30,132,204 loading 0.0320
  • chr25:21,796,415 loading -0.0316
  • chr3:5,565,848 loading 0.0303
PC153 z = -2.29
  • chr1:8,915,253 loading 0.0302
  • chr21:10,672,189 loading 0.0296
  • chr32:19,444,200 loading -0.0293
PC236 z = 2.23
  • chr20:38,047,521 loading 0.0380
  • chr20:38,715,188 loading -0.0374
  • chr20:38,805,558 loading -0.0370
Ancestry reconstruction error: 0.59
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