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GRLS Hero Oldie · Founder
Cosmic medallion portrait of Oldies_grls43de85bd, a Golden Retriever
AI portrait
About this portrait

This portrait was algorithmically built from this dog's genome: their genotype at 8 morphology loci (coat length, curl, color, ear set, body size, head shape, skull, furnishings) plus their position within the 14,478-dog atlas. The same dog always reproduces the same portrait. A different dog with different alleles gets a different portrait.

Oldies_grls43de85bd

Oldies_grls43de85bd is a Golden Retriever from the GRLS research cohort. One of 14,478 dogs who built the atlas.

See Oldies_grls43de85bd in the atlas
About Oldies_grls43de85bd

Oldies_grls43de85bd sits at the edge of the Golden Retriever cluster but still well within it.

  • Predicted medium by the six body-size genes the atlas reads (IGF1, HMGA2, SMAD2, LCORL, STC2, ADAMTS17).
  • Standard leg length. No chondrodysplasia retrogene variant.
  • Smooth coat. No wire-furnishings variant at RSPO2.
Oldies_grls43de85bd's nearest neighbors

The five dogs in the atlas whose genomes sit closest to Oldies_grls43de85bd's. Click any of them to keep exploring.

  1. GRLS_grlsV6QVAOYY Golden Retriever 33.12
  2. GRLS_grlsZFDTT5QQ Golden Retriever 34.31
  3. Oldies_grls4a2bb55d Golden Retriever 35.71
  4. GRLS_grls27Z1P2NN Golden Retriever 35.72
  5. GRLS_grls6225DWII Golden Retriever 36.35
Oldies_grls43de85bd's breed

Oldies_grls43de85bd sits in the Golden Retriever cluster, with genome overlap to Labrador Retriever - sister breeds nearby in the atlas.

Breed similarity from non-negative least squares against 91 breed centroids in PCA-256 space, corrected for atlas sample-size imbalance. Without correction, Goldens (22% of the atlas) leak into every dog's raw NNLS breakdown; with it, the bias falls out. Raw fractions stay in the dataset for re-derivation. Methodology.

  1. Golden Retriever 79%
  2. Labrador Retriever 21%
Source

From the Golden Retriever Lifetime Study . Breed-page reference: Golden Retriever.

Full genotype detail
click to expand

The actual allele call at each locus's representative SNP for this dog. Each gene name links to its page where you can see the per-breed frequency table and the direction of effect.

Body size
IGF1 C/A
HMGA2 T/T
SMAD2 A/G
LCORL G/G
STC2 A/A
ADAMTS17 G/G
Leg length
FGF4·CFA18 C/C
FGF4·CFA12 C/C
Coat
RSPO2 C/C
FGF5 T/C
KRT71 C/C
MC1R T/C
Ear set
MSRB3 A/A
Skull shape
BMP3 C/T
SMOC2 G/G
Technical details
click to expand

The numbers behind the placement. Useful for researchers reproducing the math or debugging an unexpected position; not interesting to most readers.

UMAP-3D position
x 8.689
y 10.001
z 8.557
PCA-256 distance from breed centroid
36.77
Outlier percentile in breed
62
lower = more typical
Top-3 principal components by |z|

The 3 PCs on which Oldies_grls43de85bd scores most extreme, with the 3 highest-loading SNPs on each. Foundation for the future genome-ring visualization.

PC119 z = 3.04
  • chr24:2,576,794 loading 0.0370
  • chr6:3,625,190 loading 0.0350
  • chr6:3,210,008 loading -0.0323
PC115 z = 3.02
  • chr24:13,855,152 loading 0.0360
  • chr24:10,928,728 loading 0.0358
  • chr10:6,396,863 loading -0.0341
PC74 z = 2.83
  • chr22:1,996,400 loading 0.0833
  • chr22:2,231,766 loading 0.0832
  • chr22:2,271,992 loading 0.0828
Ancestry reconstruction error: 0.58
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