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GRLS Hero Oldie · Founder
Cosmic medallion portrait of Oldies_grls8d0667c6, a Golden Retriever
AI portrait
About this portrait

This portrait was algorithmically built from this dog's genome: their genotype at 8 morphology loci (coat length, curl, color, ear set, body size, head shape, skull, furnishings) plus their position within the 14,478-dog atlas. The same dog always reproduces the same portrait. A different dog with different alleles gets a different portrait.

Oldies_grls8d0667c6

Oldies_grls8d0667c6 is a Golden Retriever from the GRLS research cohort. One of 14,478 dogs who built the atlas.

See Oldies_grls8d0667c6 in the atlas
About Oldies_grls8d0667c6

Oldies_grls8d0667c6 sits near the center of the Golden Retriever cluster - genetically very typical for the breed.

  • Predicted large by the six body-size genes the atlas reads (IGF1, HMGA2, SMAD2, LCORL, STC2, ADAMTS17).
  • Standard leg length. No chondrodysplasia retrogene variant.
  • Carrier of the RSPO2 wire-coat variant (single copy).
Oldies_grls8d0667c6's nearest neighbors

The five dogs in the atlas whose genomes sit closest to Oldies_grls8d0667c6's. Click any of them to keep exploring.

  1. GRLS_grlsBHWNZTOO Golden Retriever 27.51
  2. GRLS_grlsNZDLYSZZ Golden Retriever 28.20
  3. GRLS_grls4F1HRC55 Golden Retriever 28.70
  4. GRLS_grls4OOI0C66 Golden Retriever 29.07
  5. GRLS_grlsD6MIZNUU Golden Retriever 29.17
Oldies_grls8d0667c6's breed

Oldies_grls8d0667c6 sits in the Golden Retriever cluster, with genome overlap to Labrador Retriever - sister breeds nearby in the atlas.

Breed similarity from non-negative least squares against 91 breed centroids in PCA-256 space, corrected for atlas sample-size imbalance. Without correction, Goldens (22% of the atlas) leak into every dog's raw NNLS breakdown; with it, the bias falls out. Raw fractions stay in the dataset for re-derivation. Methodology.

  1. Golden Retriever 79%
  2. Labrador Retriever 21%
Source

From the Golden Retriever Lifetime Study . Breed-page reference: Golden Retriever.

Full genotype detail
click to expand

The actual allele call at each locus's representative SNP for this dog. Each gene name links to its page where you can see the per-breed frequency table and the direction of effect.

Body size
IGF1 C/A
HMGA2 C/T
SMAD2 G/G
LCORL G/G
STC2 C/A
ADAMTS17 G/G
Leg length
FGF4·CFA18 C/C
FGF4·CFA12 C/C
Coat
RSPO2 C/T
FGF5 T/C
KRT71 C/C
MC1R T/C
Ear set
MSRB3 A/A
Skull shape
BMP3 C/T
SMOC2 A/G
Technical details
click to expand

The numbers behind the placement. Useful for researchers reproducing the math or debugging an unexpected position; not interesting to most readers.

UMAP-3D position
x 6.961
y 11.407
z 7.899
PCA-256 distance from breed centroid
29.56
Outlier percentile in breed
23
lower = more typical
Top-3 principal components by |z|

The 3 PCs on which Oldies_grls8d0667c6 scores most extreme, with the 3 highest-loading SNPs on each. Foundation for the future genome-ring visualization.

PC176 z = 2.61
  • chr13:1,243,516 loading 0.0372
  • chr13:4,612,002 loading -0.0358
  • chr13:2,021,999 loading -0.0342
PC167 z = -2.52
  • chr6:3,625,190 loading 0.0407
  • chr6:3,210,008 loading -0.0395
  • chr6:3,012,938 loading -0.0395
PC178 z = -2.38
  • chr1:96,988,408 loading 0.0367
  • chr25:3,927,722 loading -0.0336
  • chr25:4,418,784 loading 0.0319
Ancestry reconstruction error: 0.58
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