Skip to main content
snıff
GRLS Hero Oldie · Founder
Cosmic medallion portrait of Oldies_grlsb20182c4, a Golden Retriever
AI portrait
About this portrait

This portrait was algorithmically built from this dog's genome: their genotype at 8 morphology loci (coat length, curl, color, ear set, body size, head shape, skull, furnishings) plus their position within the 14,478-dog atlas. The same dog always reproduces the same portrait. A different dog with different alleles gets a different portrait.

Oldies_grlsb20182c4

Oldies_grlsb20182c4 is a Golden Retriever from the GRLS research cohort. One of 14,478 dogs who built the atlas.

See Oldies_grlsb20182c4 in the atlas
About Oldies_grlsb20182c4

Oldies_grlsb20182c4 sits near the center of the Golden Retriever cluster - genetically very typical for the breed.

  • Predicted giant by the six body-size genes the atlas reads (IGF1, HMGA2, SMAD2, LCORL, STC2, ADAMTS17).
  • Standard leg length. No chondrodysplasia retrogene variant.
  • Carrier of the RSPO2 wire-coat variant (single copy).
Oldies_grlsb20182c4's nearest neighbors

The five dogs in the atlas whose genomes sit closest to Oldies_grlsb20182c4's. Click any of them to keep exploring.

  1. GRLS_grlsQF6BJEQQ Golden Retriever 30.90
  2. GRLS_grls43OSKSII Golden Retriever 30.97
  3. GRLS_grls7PGZ1RNN Golden Retriever 31.34
  4. GRLS_grlsNWQLV911 Golden Retriever 31.72
  5. GRLS_grlsMFNUID33 Golden Retriever 31.72
Oldies_grlsb20182c4's breed

Oldies_grlsb20182c4 sits in the Golden Retriever cluster, with genome overlap to Labrador Retriever - sister breeds nearby in the atlas.

Breed similarity from non-negative least squares against 91 breed centroids in PCA-256 space, corrected for atlas sample-size imbalance. Without correction, Goldens (22% of the atlas) leak into every dog's raw NNLS breakdown; with it, the bias falls out. Raw fractions stay in the dataset for re-derivation. Methodology.

  1. Golden Retriever 75%
  2. Labrador Retriever 25%
Source

From the Golden Retriever Lifetime Study . Breed-page reference: Golden Retriever.

Full genotype detail
click to expand

The actual allele call at each locus's representative SNP for this dog. Each gene name links to its page where you can see the per-breed frequency table and the direction of effect.

Body size
IGF1 C/A
HMGA2 T/T
SMAD2 G/G
LCORL G/G
STC2 C/A
ADAMTS17 A/A
Leg length
FGF4·CFA18 C/C
FGF4·CFA12 C/C
Coat
RSPO2 C/T
FGF5 T/C
KRT71 C/C
MC1R T/C
Ear set
MSRB3 A/A
Skull shape
BMP3 C/T
SMOC2 G/G
Technical details
click to expand

The numbers behind the placement. Useful for researchers reproducing the math or debugging an unexpected position; not interesting to most readers.

UMAP-3D position
x 8.478
y 10.111
z 8.445
PCA-256 distance from breed centroid
28.07
Outlier percentile in breed
15
lower = more typical
Top-3 principal components by |z|

The 3 PCs on which Oldies_grlsb20182c4 scores most extreme, with the 3 highest-loading SNPs on each. Foundation for the future genome-ring visualization.

PC214 z = 3.27
  • chr22:26,809,841 loading 0.0329
  • chr13:7,517,248 loading -0.0323
  • chr26:11,829,785 loading 0.0322
PC184 z = -2.76
  • chr21:19,144,029 loading 0.0303
  • chr13:28,713,034 loading -0.0303
  • chr15:5,912,708 loading 0.0300
PC136 z = -2.47
  • chr13:1,840,654 loading 0.0379
  • chr19:3,379,845 loading -0.0360
  • chr26:3,121,537 loading -0.0358
Ancestry reconstruction error: 0.50
Back to the Atlas →