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GRLS Hero Oldie · Founder
Cosmic medallion portrait of Oldies_grlse9bff9de, a Golden Retriever
AI portrait
About this portrait

This portrait was algorithmically built from this dog's genome: their genotype at 8 morphology loci (coat length, curl, color, ear set, body size, head shape, skull, furnishings) plus their position within the 14,478-dog atlas. The same dog always reproduces the same portrait. A different dog with different alleles gets a different portrait.

Oldies_grlse9bff9de

Oldies_grlse9bff9de is a Golden Retriever from the GRLS research cohort. One of 14,478 dogs who built the atlas.

See Oldies_grlse9bff9de in the atlas
About Oldies_grlse9bff9de

Oldies_grlse9bff9de sits near the center of the Golden Retriever cluster - genetically very typical for the breed.

  • Predicted giant by the six body-size genes the atlas reads (IGF1, HMGA2, SMAD2, LCORL, STC2, ADAMTS17).
  • Standard leg length. No chondrodysplasia retrogene variant.
  • Wire-coat furnishings - the eyebrow + beard variant at RSPO2.
Oldies_grlse9bff9de's nearest neighbors

The five dogs in the atlas whose genomes sit closest to Oldies_grlse9bff9de's. Click any of them to keep exploring.

  1. GRLS_grlsDA01X5MM Golden Retriever 29.77
  2. GRLS_grlsRBYRVGMM Golden Retriever 30.79
  3. GRLS_grlsQE71H133 Golden Retriever 31.66
  4. GRLS_grlsTDVKJZ22 Golden Retriever 32.10
  5. GRLS_grls27Z1P2NN Golden Retriever 32.15
Oldies_grlse9bff9de's breed

Oldies_grlse9bff9de sits in the Golden Retriever cluster, with genome overlap to Labrador Retriever - sister breeds nearby in the atlas.

Breed similarity from non-negative least squares against 91 breed centroids in PCA-256 space, corrected for atlas sample-size imbalance. Without correction, Goldens (22% of the atlas) leak into every dog's raw NNLS breakdown; with it, the bias falls out. Raw fractions stay in the dataset for re-derivation. Methodology.

  1. Golden Retriever 74%
  2. Labrador Retriever 26%
Source

From the Golden Retriever Lifetime Study . Breed-page reference: Golden Retriever.

Full genotype detail
click to expand

The actual allele call at each locus's representative SNP for this dog. Each gene name links to its page where you can see the per-breed frequency table and the direction of effect.

Body size
IGF1 C/C
HMGA2 T/T
SMAD2 G/G
LCORL G/G
STC2 C/A
ADAMTS17 G/G
Leg length
FGF4·CFA18 C/C
FGF4·CFA12 C/C
Coat
RSPO2 T/T
FGF5 T/T
KRT71 C/C
MC1R T/T
Ear set
MSRB3 A/A
Skull shape
BMP3 T/T
SMOC2 A/G
Technical details
click to expand

The numbers behind the placement. Useful for researchers reproducing the math or debugging an unexpected position; not interesting to most readers.

UMAP-3D position
x 8.911
y 10.102
z 8.428
PCA-256 distance from breed centroid
27.41
Outlier percentile in breed
11
lower = more typical
Top-3 principal components by |z|

The 3 PCs on which Oldies_grlse9bff9de scores most extreme, with the 3 highest-loading SNPs on each. Foundation for the future genome-ring visualization.

PC77 z = 2.47
  • chr23:13,507,176 loading 0.0356
  • chr6:36,116,228 loading 0.0355
  • chr23:14,586,660 loading 0.0337
PC100 z = -2.10
  • chr20:38,870,936 loading 0.0397
  • chr34:1,972,619 loading -0.0360
  • chr34:1,533,247 loading -0.0331
PC73 z = -2.02
  • chr7:44,608,561 loading 0.0331
  • chr11:69,439,722 loading 0.0324
  • chr1:66,792,676 loading 0.0313
Ancestry reconstruction error: 0.46
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