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CanVAS Shannon · Founder
Cosmic medallion portrait of PFZ39H04_PFZ39H04, a Golden Retriever
AI portrait
About this portrait

This portrait was algorithmically built from this dog's genome: their genotype at 8 morphology loci (coat length, curl, color, ear set, body size, head shape, skull, furnishings) plus their position within the 14,478-dog atlas. The same dog always reproduces the same portrait. A different dog with different alleles gets a different portrait.

PFZ39H04_PFZ39H04

PFZ39H04_PFZ39H04 is a Golden Retriever from the Shannon research cohort. One of 14,478 dogs who built the atlas.

See PFZ39H04_PFZ39H04 in the atlas
About PFZ39H04_PFZ39H04

PFZ39H04_PFZ39H04 sits near the center of the Golden Retriever cluster - genetically very typical for the breed.

  • Predicted large by the six body-size genes the atlas reads (IGF1, HMGA2, SMAD2, LCORL, STC2, ADAMTS17).
  • Standard leg length. No chondrodysplasia retrogene variant.
  • Wire-coat furnishings - the eyebrow + beard variant at RSPO2.
PFZ39H04_PFZ39H04's nearest neighbors

The five dogs in the atlas whose genomes sit closest to PFZ39H04_PFZ39H04's. Click any of them to keep exploring.

  1. GRLS_grlsQO79PZ99 Golden Retriever 28.09
  2. PFZ29A05_PFZ29A05 Golden Retriever 28.33
  3. GRLS_grls9BIH3NYY Golden Retriever 29.32
  4. PFZ8B04_PFZ8B04 Golden Retriever 29.45
  5. GRLS_grlsM4XBMROO Golden Retriever 29.54
PFZ39H04_PFZ39H04's breed

PFZ39H04_PFZ39H04 sits in the Golden Retriever cluster, with genome overlap to Labrador Retriever - sister breeds nearby in the atlas.

Breed similarity from non-negative least squares against 91 breed centroids in PCA-256 space, corrected for atlas sample-size imbalance. Without correction, Goldens (22% of the atlas) leak into every dog's raw NNLS breakdown; with it, the bias falls out. Raw fractions stay in the dataset for re-derivation. Methodology.

  1. Golden Retriever 84%
  2. Labrador Retriever 16%
Source

From the CanVAS (Shannon cohort) . Breed-page reference: Golden Retriever.

Full genotype detail
click to expand

The actual allele call at each locus's representative SNP for this dog. Each gene name links to its page where you can see the per-breed frequency table and the direction of effect.

Body size
IGF1 C/C
HMGA2 T/T
SMAD2 A/G
LCORL G/G
STC2 A/A
ADAMTS17 G/A
Leg length
FGF4·CFA18 C/C
FGF4·CFA12 C/C
Coat
RSPO2 T/T
FGF5 T/C
KRT71 C/C
MC1R T/T
Ear set
MSRB3 A/A
Skull shape
BMP3 C/T
SMOC2 G/G
Technical details
click to expand

The numbers behind the placement. Useful for researchers reproducing the math or debugging an unexpected position; not interesting to most readers.

UMAP-3D position
x 7.676
y 11.272
z 8.418
PCA-256 distance from breed centroid
29.09
Outlier percentile in breed
21
lower = more typical
Top-3 principal components by |z|

The 3 PCs on which PFZ39H04_PFZ39H04 scores most extreme, with the 3 highest-loading SNPs on each. Foundation for the future genome-ring visualization.

PC43 z = -3.14
  • chr28:11,007,373 loading 0.0365
  • chr28:5,497,677 loading 0.0343
  • chr7:43,226,466 loading 0.0325
PC206 z = -2.77
  • chr7:42,935,741 loading 0.0386
  • chr19:34,609,563 loading -0.0356
  • chr30:22,656,587 loading 0.0321
PC172 z = 2.70
  • chr13:4,083,191 loading 0.0359
  • chr24:4,114,956 loading 0.0356
  • chr13:12,284,714 loading 0.0349
Ancestry reconstruction error: 0.55
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