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CanVAS Hayward2016 · Founder
Cosmic medallion portrait of PFZ5E02_PFZ5E02, a Golden Retriever
AI portrait
About this portrait

This portrait was algorithmically built from this dog's genome: their genotype at 8 morphology loci (coat length, curl, color, ear set, body size, head shape, skull, furnishings) plus their position within the 14,478-dog atlas. The same dog always reproduces the same portrait. A different dog with different alleles gets a different portrait.

PFZ5E02_PFZ5E02

PFZ5E02_PFZ5E02 is a Golden Retriever from the Hayward2016 research cohort. One of 14,478 dogs who built the atlas.

See PFZ5E02_PFZ5E02 in the atlas
About PFZ5E02_PFZ5E02

PFZ5E02_PFZ5E02 sits at the edge of the Golden Retriever cluster but still well within it.

  • Predicted giant by the six body-size genes the atlas reads (IGF1, HMGA2, SMAD2, LCORL, STC2, ADAMTS17).
  • Standard leg length. No chondrodysplasia retrogene variant.
  • Carrier of the RSPO2 wire-coat variant (single copy).
PFZ5E02_PFZ5E02's nearest neighbors

The five dogs in the atlas whose genomes sit closest to PFZ5E02_PFZ5E02's. Click any of them to keep exploring.

  1. GRLS_grls83HHNYHH Golden Retriever 33.54
  2. GRLS_grlsRYGDYMRR Golden Retriever 33.64
  3. GRLS_grls5EIKG100 Golden Retriever 34.41
  4. GRLS_grls4J747PUU Golden Retriever 34.95
  5. PILOT_grlsTETO34MM Golden Retriever 35.14
PFZ5E02_PFZ5E02's breed

PFZ5E02_PFZ5E02 sits in the Golden Retriever cluster, with genome overlap to Labrador Retriever - sister breeds nearby in the atlas.

Breed similarity from non-negative least squares against 91 breed centroids in PCA-256 space, corrected for atlas sample-size imbalance. Without correction, Goldens (22% of the atlas) leak into every dog's raw NNLS breakdown; with it, the bias falls out. Raw fractions stay in the dataset for re-derivation. Methodology.

  1. Golden Retriever 84%
  2. Labrador Retriever 16%
Source

From the CanVAS (Hayward2016 cohort) . Breed-page reference: Golden Retriever.

Full genotype detail
click to expand

The actual allele call at each locus's representative SNP for this dog. Each gene name links to its page where you can see the per-breed frequency table and the direction of effect.

Body size
IGF1 C/C
HMGA2 T/T
SMAD2 G/G
LCORL G/G
STC2 A/A
ADAMTS17 A/A
Leg length
FGF4·CFA18 C/C
FGF4·CFA12 C/C
Coat
RSPO2 C/T
FGF5 T/C
KRT71 C/C
MC1R T/T
Ear set
MSRB3 A/A
Skull shape
BMP3 C/T
SMOC2 G/G
Technical details
click to expand

The numbers behind the placement. Useful for researchers reproducing the math or debugging an unexpected position; not interesting to most readers.

UMAP-3D position
x 8.369
y 10.586
z 9.247
PCA-256 distance from breed centroid
36.91
Outlier percentile in breed
63
lower = more typical
Top-3 principal components by |z|

The 3 PCs on which PFZ5E02_PFZ5E02 scores most extreme, with the 3 highest-loading SNPs on each. Foundation for the future genome-ring visualization.

PC64 z = -2.91
  • chr8:38,372,734 loading 0.0317
  • chr23:20,107,050 loading 0.0304
  • chr23:19,874,668 loading -0.0292
PC176 z = 2.69
  • chr13:1,243,516 loading 0.0372
  • chr13:4,612,002 loading -0.0358
  • chr13:2,021,999 loading -0.0342
PC63 z = 2.67
  • chr22:1,969,643 loading 0.0329
  • chr22:1,892,165 loading 0.0327
  • chr17:12,181,234 loading 0.0322
Ancestry reconstruction error: 0.56
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