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CanVAS Hayward2016 · Founder
Cosmic medallion portrait of PFZ9F10_PFZ9F10, a Golden Retriever
AI portrait
About this portrait

This portrait was algorithmically built from this dog's genome: their genotype at 8 morphology loci (coat length, curl, color, ear set, body size, head shape, skull, furnishings) plus their position within the 14,478-dog atlas. The same dog always reproduces the same portrait. A different dog with different alleles gets a different portrait.

PFZ9F10_PFZ9F10

PFZ9F10_PFZ9F10 is a Golden Retriever from the Hayward2016 research cohort. One of 14,478 dogs who built the atlas.

See PFZ9F10_PFZ9F10 in the atlas
About PFZ9F10_PFZ9F10

PFZ9F10_PFZ9F10 sits near the center of the Golden Retriever cluster - genetically very typical for the breed.

  • Predicted large by the six body-size genes the atlas reads (IGF1, HMGA2, SMAD2, LCORL, STC2, ADAMTS17).
  • Standard leg length. No chondrodysplasia retrogene variant.
  • Carrier of the RSPO2 wire-coat variant (single copy).
PFZ9F10_PFZ9F10's nearest neighbors

The five dogs in the atlas whose genomes sit closest to PFZ9F10_PFZ9F10's. Click any of them to keep exploring.

  1. GRLS_grls901OJG66 Golden Retriever 27.51
  2. GRLS_grlsFD8D0QRR Golden Retriever 28.02
  3. GRLS_grlsFMCUG5FF Golden Retriever 28.14
  4. GRLS_grls23SK5GWW Golden Retriever 28.33
  5. PFZ25F01_PFZ25F01 Golden Retriever 28.38
PFZ9F10_PFZ9F10's breed

PFZ9F10_PFZ9F10 sits in the Golden Retriever cluster, with genome overlap to Labrador Retriever - sister breeds nearby in the atlas.

Breed similarity from non-negative least squares against 91 breed centroids in PCA-256 space, corrected for atlas sample-size imbalance. Without correction, Goldens (22% of the atlas) leak into every dog's raw NNLS breakdown; with it, the bias falls out. Raw fractions stay in the dataset for re-derivation. Methodology.

  1. Golden Retriever 75%
  2. Labrador Retriever 25%
Source

From the CanVAS (Hayward2016 cohort) . Breed-page reference: Golden Retriever.

Full genotype detail
click to expand

The actual allele call at each locus's representative SNP for this dog. Each gene name links to its page where you can see the per-breed frequency table and the direction of effect.

Body size
IGF1 C/C
HMGA2 T/T
SMAD2 G/G
LCORL G/G
STC2 A/A
ADAMTS17 G/G
Leg length
FGF4·CFA18 C/C
FGF4·CFA12 C/C
Coat
RSPO2 C/T
FGF5 C/C
KRT71 C/C
MC1R T/T
Ear set
MSRB3 A/A
Skull shape
BMP3 C/T
SMOC2 A/G
Technical details
click to expand

The numbers behind the placement. Useful for researchers reproducing the math or debugging an unexpected position; not interesting to most readers.

UMAP-3D position
x 7.219
y 11.396
z 8.050
PCA-256 distance from breed centroid
28.17
Outlier percentile in breed
15
lower = more typical
Top-3 principal components by |z|

The 3 PCs on which PFZ9F10_PFZ9F10 scores most extreme, with the 3 highest-loading SNPs on each. Foundation for the future genome-ring visualization.

PC43 z = -3.72
  • chr28:11,007,373 loading 0.0365
  • chr28:5,497,677 loading 0.0343
  • chr7:43,226,466 loading 0.0325
PC138 z = 2.35
  • chr15:23,130,452 loading 0.0401
  • chr28:1,724,663 loading 0.0367
  • chr15:42,263,341 loading 0.0350
PC218 z = 2.07
  • chr7:62,094,557 loading 0.0330
  • chr17:4,233,511 loading -0.0324
  • chr28:21,567,516 loading 0.0320
Ancestry reconstruction error: 0.55
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