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Cosmic medallion portrait of PILOT_grls02VDCV99, a Golden Retriever
AI portrait
About this portrait

This portrait was algorithmically built from this dog's genome: their genotype at 8 morphology loci (coat length, curl, color, ear set, body size, head shape, skull, furnishings) plus their position within the 14,478-dog atlas. The same dog always reproduces the same portrait. A different dog with different alleles gets a different portrait.

PILOT_grls02VDCV99

PILOT_grls02VDCV99 is a Golden Retriever from the GRLS research cohort. One of 14,478 dogs who built the atlas.

See PILOT_grls02VDCV99 in the atlas
About PILOT_grls02VDCV99

PILOT_grls02VDCV99 sits near the center of the Golden Retriever cluster - genetically very typical for the breed.

  • Predicted large by the six body-size genes the atlas reads (IGF1, HMGA2, SMAD2, LCORL, STC2, ADAMTS17).
  • Standard leg length. No chondrodysplasia retrogene variant.
  • Wire-coat furnishings - the eyebrow + beard variant at RSPO2.
PILOT_grls02VDCV99's nearest neighbors

The five dogs in the atlas whose genomes sit closest to PILOT_grls02VDCV99's. Click any of them to keep exploring.

  1. GRLS_grls8HJGF3NN Golden Retriever 32.46
  2. GRLS_grlsVCLYL133 Golden Retriever 32.67
  3. GRLS_grlsTPL1L00 Golden Retriever 33.55
  4. GRLS_grlsEU20O6AA Golden Retriever 33.87
  5. GRLS_grlsLZHJ6B33 Golden Retriever 34.62
PILOT_grls02VDCV99's breed

PILOT_grls02VDCV99 sits in the Golden Retriever cluster, with genome overlap to Labrador Retriever - sister breeds nearby in the atlas.

Breed similarity from non-negative least squares against 91 breed centroids in PCA-256 space, corrected for atlas sample-size imbalance. Without correction, Goldens (22% of the atlas) leak into every dog's raw NNLS breakdown; with it, the bias falls out. Raw fractions stay in the dataset for re-derivation. Methodology.

  1. Golden Retriever 80%
  2. Labrador Retriever 21%
Source

From the Golden Retriever Lifetime Study . Breed-page reference: Golden Retriever.

Full genotype detail
click to expand

The actual allele call at each locus's representative SNP for this dog. Each gene name links to its page where you can see the per-breed frequency table and the direction of effect.

Body size
IGF1 A/A
HMGA2 T/T
SMAD2 G/G
LCORL G/G
STC2 C/A
ADAMTS17 G/G
Leg length
FGF4·CFA18 C/C
FGF4·CFA12 C/C
Coat
RSPO2 T/T
FGF5 C/C
KRT71 C/C
MC1R T/T
Ear set
MSRB3 A/A
Skull shape
BMP3 C/C
SMOC2 G/G
Technical details
click to expand

The numbers behind the placement. Useful for researchers reproducing the math or debugging an unexpected position; not interesting to most readers.

UMAP-3D position
x 8.113
y 10.627
z 8.030
PCA-256 distance from breed centroid
29.52
Outlier percentile in breed
23
lower = more typical
Top-3 principal components by |z|

The 3 PCs on which PILOT_grls02VDCV99 scores most extreme, with the 3 highest-loading SNPs on each. Foundation for the future genome-ring visualization.

PC182 z = -2.86
  • chr7:40,535,333 loading 0.0363
  • chr7:41,489,243 loading 0.0356
  • chr15:32,204,502 loading 0.0340
PC82 z = -2.85
  • chr1:68,097,128 loading 0.0396
  • chr1:69,785,342 loading -0.0385
  • chr1:70,040,058 loading 0.0383
PC77 z = 2.73
  • chr23:13,507,176 loading 0.0356
  • chr6:36,116,228 loading 0.0355
  • chr23:14,586,660 loading 0.0337
Ancestry reconstruction error: 0.53
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