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Cosmic medallion portrait of PILOT_grls3GG6Z3GG, a Golden Retriever
AI portrait
About this portrait

This portrait was algorithmically built from this dog's genome: their genotype at 8 morphology loci (coat length, curl, color, ear set, body size, head shape, skull, furnishings) plus their position within the 14,478-dog atlas. The same dog always reproduces the same portrait. A different dog with different alleles gets a different portrait.

PILOT_grls3GG6Z3GG

PILOT_grls3GG6Z3GG is a Golden Retriever from the GRLS research cohort. One of 14,478 dogs who built the atlas.

See PILOT_grls3GG6Z3GG in the atlas
About PILOT_grls3GG6Z3GG

PILOT_grls3GG6Z3GG sits at the edge of the Golden Retriever cluster but still well within it.

  • Predicted large by the six body-size genes the atlas reads (IGF1, HMGA2, SMAD2, LCORL, STC2, ADAMTS17).
  • Standard leg length. No chondrodysplasia retrogene variant.
  • Carrier of the RSPO2 wire-coat variant (single copy).
PILOT_grls3GG6Z3GG's nearest neighbors

The five dogs in the atlas whose genomes sit closest to PILOT_grls3GG6Z3GG's. Click any of them to keep exploring.

  1. GRLS_grlsU7K9XQ11 Golden Retriever 31.49
  2. GRLS_grls21MTXB44 Golden Retriever 34.63
  3. GRLS_grlsN4RK7ERR Golden Retriever 34.94
  4. GRLS_grlsKLOJK533 Golden Retriever 35.61
  5. GRLS_grlsVK01J9LL Golden Retriever 35.61
PILOT_grls3GG6Z3GG's breed

PILOT_grls3GG6Z3GG sits in the Golden Retriever cluster, with genome overlap to Labrador Retriever - sister breeds nearby in the atlas.

Breed similarity from non-negative least squares against 91 breed centroids in PCA-256 space, corrected for atlas sample-size imbalance. Without correction, Goldens (22% of the atlas) leak into every dog's raw NNLS breakdown; with it, the bias falls out. Raw fractions stay in the dataset for re-derivation. Methodology.

  1. Golden Retriever 80%
  2. Labrador Retriever 20%
Source

From the Golden Retriever Lifetime Study . Breed-page reference: Golden Retriever.

Full genotype detail
click to expand

The actual allele call at each locus's representative SNP for this dog. Each gene name links to its page where you can see the per-breed frequency table and the direction of effect.

Body size
IGF1 C/C
HMGA2 C/T
SMAD2 G/G
LCORL G/G
STC2 A/A
ADAMTS17 G/G
Leg length
FGF4·CFA18 C/C
FGF4·CFA12 C/C
Coat
RSPO2 C/T
FGF5 C/C
KRT71 C/C
MC1R T/C
Ear set
MSRB3 A/A
Skull shape
BMP3 C/C
SMOC2 G/G
Technical details
click to expand

The numbers behind the placement. Useful for researchers reproducing the math or debugging an unexpected position; not interesting to most readers.

UMAP-3D position
x 9.302
y 10.184
z 9.353
PCA-256 distance from breed centroid
36.52
Outlier percentile in breed
61
lower = more typical
Top-3 principal components by |z|

The 3 PCs on which PILOT_grls3GG6Z3GG scores most extreme, with the 3 highest-loading SNPs on each. Foundation for the future genome-ring visualization.

PC105 z = -3.03
  • chr9:10,719,447 loading 0.0424
  • chr34:1,972,619 loading -0.0401
  • chr34:1,432,211 loading -0.0400
PC130 z = -2.91
  • chr6:33,386,202 loading 0.0387
  • chr6:30,876,588 loading 0.0376
  • chr6:30,769,727 loading -0.0372
PC183 z = 2.77
  • chr23:32,351,248 loading 0.0384
  • chr7:40,629,884 loading 0.0327
  • chr21:33,590,242 loading -0.0320
Ancestry reconstruction error: 0.56
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