Skip to main content
snıff
GRLS Hero · Founder
Cosmic medallion portrait of PILOT_grls3OP52Z33, a Golden Retriever
AI portrait
About this portrait

This portrait was algorithmically built from this dog's genome: their genotype at 8 morphology loci (coat length, curl, color, ear set, body size, head shape, skull, furnishings) plus their position within the 14,478-dog atlas. The same dog always reproduces the same portrait. A different dog with different alleles gets a different portrait.

PILOT_grls3OP52Z33

PILOT_grls3OP52Z33 is a Golden Retriever from the GRLS research cohort. One of 14,478 dogs who built the atlas.

See PILOT_grls3OP52Z33 in the atlas
About PILOT_grls3OP52Z33

PILOT_grls3OP52Z33 is a notable Golden Retriever - distinctive within the breed.

  • Predicted large by the six body-size genes the atlas reads (IGF1, HMGA2, SMAD2, LCORL, STC2, ADAMTS17).
  • Standard leg length. No chondrodysplasia retrogene variant.
  • Carrier of the RSPO2 wire-coat variant (single copy).
PILOT_grls3OP52Z33's nearest neighbors

The five dogs in the atlas whose genomes sit closest to PILOT_grls3OP52Z33's. Click any of them to keep exploring.

  1. GRLS_grlsYO6LP033 Golden Retriever 24.69
  2. GRLS_grlsA5PHKWWW Golden Retriever 25.89
  3. GRLS_grlsDORNMC00 Golden Retriever 27.35
  4. GRLS_grlsO2Z2E677 Golden Retriever 33.14
  5. GRLS_grls1B9PK7YY Golden Retriever 36.22
PILOT_grls3OP52Z33's breed

PILOT_grls3OP52Z33 sits in the Golden Retriever cluster, with genome overlap to Labrador Retriever - sister breeds nearby in the atlas.

Breed similarity from non-negative least squares against 91 breed centroids in PCA-256 space, corrected for atlas sample-size imbalance. Without correction, Goldens (22% of the atlas) leak into every dog's raw NNLS breakdown; with it, the bias falls out. Raw fractions stay in the dataset for re-derivation. Methodology.

  1. Golden Retriever 82%
  2. Labrador Retriever 18%
Source

From the Golden Retriever Lifetime Study . Breed-page reference: Golden Retriever.

Full genotype detail
click to expand

The actual allele call at each locus's representative SNP for this dog. Each gene name links to its page where you can see the per-breed frequency table and the direction of effect.

Body size
IGF1 C/A
HMGA2 T/T
SMAD2 G/G
LCORL G/G
STC2 A/A
ADAMTS17 G/A
Leg length
FGF4·CFA18 C/C
FGF4·CFA12 C/C
Coat
RSPO2 C/T
FGF5 C/C
KRT71 C/C
MC1R T/T
Ear set
MSRB3 A/A
Skull shape
BMP3 C/C
SMOC2 G/G
Technical details
click to expand

The numbers behind the placement. Useful for researchers reproducing the math or debugging an unexpected position; not interesting to most readers.

UMAP-3D position
x 9.861
y 9.630
z 8.492
PCA-256 distance from breed centroid
39.80
Outlier percentile in breed
75
lower = more typical
Top-3 principal components by |z|

The 3 PCs on which PILOT_grls3OP52Z33 scores most extreme, with the 3 highest-loading SNPs on each. Foundation for the future genome-ring visualization.

PC82 z = -3.59
  • chr1:68,097,128 loading 0.0396
  • chr1:69,785,342 loading -0.0385
  • chr1:70,040,058 loading 0.0383
PC154 z = -3.47
  • chr34:1,972,619 loading 0.0431
  • chr34:1,533,247 loading 0.0397
  • chr34:2,125,452 loading 0.0365
PC116 z = -3.43
  • chr21:8,227,069 loading 0.0376
  • chr16:47,900,123 loading 0.0333
  • chr1:24,270,460 loading 0.0312
Ancestry reconstruction error: 0.63
Back to the Atlas →