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Cosmic medallion portrait of PILOT_grls4DM9Y9XX, a Golden Retriever
AI portrait
About this portrait

This portrait was algorithmically built from this dog's genome: their genotype at 8 morphology loci (coat length, curl, color, ear set, body size, head shape, skull, furnishings) plus their position within the 14,478-dog atlas. The same dog always reproduces the same portrait. A different dog with different alleles gets a different portrait.

PILOT_grls4DM9Y9XX

PILOT_grls4DM9Y9XX is a Golden Retriever from the GRLS research cohort. One of 14,478 dogs who built the atlas.

See PILOT_grls4DM9Y9XX in the atlas
About PILOT_grls4DM9Y9XX

PILOT_grls4DM9Y9XX sits well inside the Golden Retriever cluster - a fairly typical example.

  • Predicted small by the six body-size genes the atlas reads (IGF1, HMGA2, SMAD2, LCORL, STC2, ADAMTS17).
  • Standard leg length. No chondrodysplasia retrogene variant.
  • Smooth coat. No wire-furnishings variant at RSPO2.
PILOT_grls4DM9Y9XX's nearest neighbors

The five dogs in the atlas whose genomes sit closest to PILOT_grls4DM9Y9XX's. Click any of them to keep exploring.

  1. GRLS_grlsY7T94JUU Golden Retriever 32.61
  2. GRLS_grls83HHNYHH Golden Retriever 32.69
  3. GRLS_grlsM4XBMROO Golden Retriever 33.17
  4. GRLS_grlsOH931S00 Golden Retriever 33.39
  5. GRLS_grls4SK5P4OO Golden Retriever 33.45
PILOT_grls4DM9Y9XX's breed

PILOT_grls4DM9Y9XX sits in the Golden Retriever cluster, with genome overlap to Labrador Retriever - sister breeds nearby in the atlas.

Breed similarity from non-negative least squares against 91 breed centroids in PCA-256 space, corrected for atlas sample-size imbalance. Without correction, Goldens (22% of the atlas) leak into every dog's raw NNLS breakdown; with it, the bias falls out. Raw fractions stay in the dataset for re-derivation. Methodology.

  1. Golden Retriever 76%
  2. Labrador Retriever 24%
Source

From the Golden Retriever Lifetime Study . Breed-page reference: Golden Retriever.

Full genotype detail
click to expand

The actual allele call at each locus's representative SNP for this dog. Each gene name links to its page where you can see the per-breed frequency table and the direction of effect.

Body size
IGF1 A/A
HMGA2 C/T
SMAD2 G/G
LCORL G/G
STC2 A/A
ADAMTS17 G/G
Leg length
FGF4·CFA18 C/C
FGF4·CFA12 C/C
Coat
RSPO2 C/C
FGF5 C/C
KRT71 C/C
MC1R T/C
Ear set
MSRB3 A/A
Skull shape
BMP3 C/C
SMOC2 G/G
Technical details
click to expand

The numbers behind the placement. Useful for researchers reproducing the math or debugging an unexpected position; not interesting to most readers.

UMAP-3D position
x 8.446
y 10.421
z 8.921
PCA-256 distance from breed centroid
32.17
Outlier percentile in breed
38
lower = more typical
Top-3 principal components by |z|

The 3 PCs on which PILOT_grls4DM9Y9XX scores most extreme, with the 3 highest-loading SNPs on each. Foundation for the future genome-ring visualization.

PC184 z = 3.12
  • chr21:19,144,029 loading 0.0303
  • chr13:28,713,034 loading -0.0303
  • chr15:5,912,708 loading 0.0300
PC64 z = -2.72
  • chr8:38,372,734 loading 0.0317
  • chr23:20,107,050 loading 0.0304
  • chr23:19,874,668 loading -0.0292
PC179 z = -2.68
  • chr34:3,531,310 loading 0.0341
  • chr34:3,128,578 loading -0.0327
  • chr4:57,360,298 loading -0.0326
Ancestry reconstruction error: 0.57
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